RNA id: TU23710


Basic Information

Item Value
RNA id TU23710
length 480
RNA type TUCP
GC content 0.53
exon number 2
gene id G19113
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50551880 ~ 50552985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGACTGGCAGTGTCCAGCTCATCTCATTGGTTAAGCTCCATTGTTTAAGTGTCGTGTTTGACAGGTGTGAACCTTCAGGCTTTGGAACAGTGTGATGTTGTGGCCCTGTGTTTTCAGAAGGAGTCAGATCTGGAGAACTCTGAGCTTTGTGTTTCTGAACTCGGTGCGGCTGTGGGACTTCATCGAGGAGCGCGAGCAGCGGGGGGGCAGGCCGTACGAGGACCAGGTCAGCGAGCTGGGGGAGCTGTTCATGCAACTCTCCGGGGCCGACACGGACGGAGCCATCCCAGCCCCTCTGCTCCCGCATCACTAACCCCTGCACTCCTACCTTTCGGAGTCAGAGTCCAGCTTATGGTCGTGTTTTACTTCACTCCTCGGGCCACAATAACATATCAAATTGCAGCTTAATGGGTAATAATGGGCAATAAAAGTATACTCTCTCGTCCGCCCAGCAGCGGTTGAAGATCTCATGTTANN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23651 lncRNA upstream 199933 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 209730 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 217374 50333760 ~ 50334506 (+) True G19059
TU23647 lncRNA upstream 218514 50332466 ~ 50333366 (+) True G19058
TU23628 lncRNA upstream 396055 50155453 ~ 50155825 (+) True G19042
TU23711 lncRNA downstream 6465 50559450 ~ 50563278 (+) True G19114
TU23752 lncRNA downstream 78393 50631378 ~ 50631634 (+) True G19146
TU23759 lncRNA downstream 87602 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 174755 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 584308 51137293 ~ 51138835 (+) True G19245
AMCG00017207 mRNA upstream 14210 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 29338 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017205 mRNA upstream 38525 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017202 mRNA upstream 75125 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017201 mRNA upstream 106083 50441547 ~ 50445797 (+) True AMCG00017201
AMCG00017212 mRNA downstream 62254 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017210 mRNA downstream 79123 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017211 mRNA downstream 92127 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017209 mRNA downstream 111341 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017217 mRNA downstream 143861 50696846 ~ 50711492 (+) True AMCG00017217
TU23515 other upstream 830409 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1148246 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5895782 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 6420278 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 8154093 42391297 ~ 42397787 (+) True G17697
TU23712 other downstream 6465 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 2261268 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2268076 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2782924 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2950447 53503432 ~ 53536464 (+) True G19754

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007314 True 1028 lncRNA 0.51 3 NC_007122.7 566223 ~ 570421 (-)
grasscarp (Ctenopharyngodon idella) CI01000057_04635274_04644405.mRNA True 1264 mRNA 0.57 8 CI01000057 4635217 ~ 4644405 (-)