RNA id: TU23712



Basic Information


Item Value
RNA id TU23712
length 980
RNA type TUCP
GC content 0.47
exon number 3
gene id G19114
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50559450 ~ 50563278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTAACCCCAGGAAAGAGGTCCTTTTGTTTGCACCACCACCTCCCACCAGCCCCTCTGGCTATATTTGACTGATTTGTCCAcacagaatcttttttttttttccttcctgtcACAGAGAGCGTTCGACTCACCCATACCCCGTTNNNTTTCCACACAGATCATTTTCATGGTCGGCCGAGGGTATTTATCTCCAGACCTCAGCAAGCTGTACAAGAGCTGTCCCAAAGCCATGAAGAGGCTTGTAGCAGACTGcattaaaaaggcaaaagaCGAGAGGCCGCTCTTCCCTCAGATCTTGTCCTCGATAGAACTGCTGCAGCACTCGCTGCCCAAAATCAACCGCAGTGCCTCGGAGCCGTCCCTCCATCGAGCCTCGCACACCGAAGACATCAACTCATGCACTTTGACCTCCATGAGGCTGCCTGTGTTCTAGCACCGCCTCCCTGCCCCACCCCATCCAGGCCAAATACCCTCAGCTCAACAGAcggaacaaaaacaacacaacagtgcaatccagtgtatgtatgtgtatcaCTGCAGCCGGTGCAATCACACTGCAGCACCAATAATAAGAACTTAACAGGTGAGAGAGGGTATTCAGTTGTATGAAGGACATGAAGCTTTGTTCCTAGTTTTCTTACTGCCCCTCCATCTAATGGGGAAACAGCGCGATGGCCGACACACGGAGAGCCAGACTACTTTTCAAGACTGCGGGAAACGAATTCAACAGGATCGTTTGGAACAGTTACAGGATTCAAGAAAACCAAGAACTGCAAACCTGTTGAAAACCTCTTGATTCTTCTCCATTTAGCAGTTAAGTTTCACTTAATGGTGAAACAATGCTGCACAAACCCATGAAATGGAAGTGTAAAATTGGTAAAAAGTAGGACAATACTACACAATTATTCCCAACGTCATGAAATCCCAGCCTCTATGGTATGAACCTTAACTGCAGGTAAACTTTAAGGGAAAATCTCTN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23651 lncRNA upstream 207503 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 217300 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 224944 50333760 ~ 50334506 (+) True G19059
TU23647 lncRNA upstream 226084 50332466 ~ 50333366 (+) True G19058
TU23628 lncRNA upstream 403625 50155453 ~ 50155825 (+) True G19042
TU23752 lncRNA downstream 69590 50631378 ~ 50631634 (+) True G19146
TU23759 lncRNA downstream 78799 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 165952 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 575505 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 734044 51295832 ~ 51296718 (+) True G19275
AMCG00017207 mRNA upstream 21780 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 36908 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017205 mRNA upstream 46095 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017202 mRNA upstream 82695 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017201 mRNA upstream 113653 50441547 ~ 50445797 (+) True AMCG00017201
AMCG00017212 mRNA downstream 53451 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017210 mRNA downstream 70320 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017211 mRNA downstream 83324 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017209 mRNA downstream 102538 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017217 mRNA downstream 135058 50696846 ~ 50711492 (+) True AMCG00017217
TU23710 other upstream 6465 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 837979 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1155816 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5903352 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 6427848 44126214 ~ 44131602 (+) False AMCG00017078
TU24289 other downstream 2252465 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2259273 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2774121 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2941644 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3228759 53790547 ~ 53792694 (+) True G19829

Expression Profile