RNA id: TU23741


Basic Information

Item Value
RNA id TU23741
length 339
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G19137
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50568350 ~ 50570723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNCAATAAAAGTATACTCTCTCGTCCGCCCAGCAGCGGTTGAAGATCTCATGttaacagtgtttttaattcCGGTATTGTATTTGGAGAGAAGGTAGTATCAAAATCTGCTAGTGACAGCtgctatatttttttctatgcttTACATTTGCCAGATTAAAAACCATTTTTAAGGAGATGAAAACGGTTCCTCCGTGTTCAGAGTTTGACGAAACCAAAATGgaggacttgtgtgtgtgtgacaaatgACTGCATAATttgtatgtacttatttaaataGGCCAGTTTattgtgaagaaataaaatctcTGCACTTATTGGAACTTTATACAGATAAGTG

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23740 lncRNA downstream 5434 50561023 ~ 50562916 (-) True G19136
TU23670 lncRNA downstream 236613 50329178 ~ 50331737 (-) True G19081
TU23643 lncRNA downstream 297693 50270408 ~ 50270657 (-) True G19055
TU23637 lncRNA downstream 377466 50187894 ~ 50190884 (-) True G19049
TU23629 lncRNA downstream 412516 50155430 ~ 50155834 (-) True G19043
TU23747 lncRNA upstream 51458 50622181 ~ 50622439 (-) True G19141
TU23757 lncRNA upstream 66592 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA upstream 67146 50637869 ~ 50638771 (-) False G19150
TU23886 lncRNA upstream 594635 51165358 ~ 51165675 (-) True G19259
TU23900 lncRNA upstream 630208 51200931 ~ 51212373 (-) False AMCG00017232
AMCG00017208 mRNA downstream 42347 50523558 ~ 50526003 (-) True AMCG00017208
AMCG00017203 mRNA downstream 112238 50447385 ~ 50456112 (-) True AMCG00017203
AMCG00017199 mRNA downstream 183781 50377265 ~ 50384569 (-) True AMCG00017199
AMCG00017200 mRNA downstream 216551 50331771 ~ 50351799 (-) True AMCG00017200
AMCG00017191 mRNA downstream 723224 49844467 ~ 49845126 (-) True AMCG00017191
AMCG00017214 mRNA upstream 1393 50572116 ~ 50593081 (-) True AMCG00017214
AMCG00017215 mRNA upstream 72687 50643410 ~ 50652954 (-) True AMCG00017215
AMCG00017213 mRNA upstream 85396 50656119 ~ 50663669 (-) True AMCG00017213
AMCG00017216 mRNA upstream 99865 50670588 ~ 50671364 (-) True AMCG00017216
AMCG00017220 mRNA upstream 105528 50676251 ~ 50679198 (-) True AMCG00017220
TU23267 other downstream 2074001 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 7703734 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9351119 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 12509411 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 860132 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 874864 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 874864 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 1285523 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 2287867 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile