RNA id: TU23756


Basic Information

Item Value
RNA id TU23756
length 742
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G19150
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50637315 ~ 50638771 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaatacaacattttattaaaatacactcaattcatttttagaaaatacattttaaagacaatgcAGTATGCAGTACGGTAgtacagattaataaaaaagttatttacagtatttcttGTTCAACGTTTGAGACCTACACAATATAGCAGGATACATGTATCTTATGCATTGGAACACTTTTACTGACATGTATGTAAGTGTAACTCACTGCACATGACCTTTAACACTGCTGTGagtctgaaaagaaaatatcctCGTAGTAAATATGTTATCTTGCAAACGGTCTGTGATGTAGCTACTTAAACGCCTACTTTACATCTGAATTGCAGATGTGCGGCACATTGCAGAGATCAAGACTTGAGACCCATCCTAGTCCGTCATTCCTGCTATAATCCCAGGAGTGTTTTAGCTTCTTCGCTTTGTGCCATCAGCGTCTCACTGGCGTACTTCTGCAAGAGCTCCATCTTCTTCCTTCTGACCAAGGCTTCCTCAATCTCTTTCTGTGAGGGTACAGGGACATGGGCTATAAAGGACTGTGATCCTTCCTCTCCTTCCATTAATTCTCCCATGTCTTCATCAGAGTGCtaattgacaaaacaaaagaagtGGCATAGTTTATTTAGCTCCAGGTTAGGAAGCATCAGATAATTAGTGAATGCTGCATCTTCACTGTGTTAGTATTGTCCTGCTCCGGTCATCAGTATTCACACACTTCTTCATTTTGCTTAATTTtgtaaagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23747 lncRNA downstream 15430 50622181 ~ 50622439 (-) True G19141
TU23734 lncRNA downstream 15937 50531201 ~ 50621932 (-) True G19130
TU23741 lncRNA downstream 67146 50568350 ~ 50570723 (-) True G19137
TU23740 lncRNA downstream 74953 50561023 ~ 50562916 (-) True G19136
TU23670 lncRNA downstream 306132 50329178 ~ 50331737 (-) True G19081
TU23886 lncRNA upstream 526587 51165358 ~ 51165675 (-) True G19259
TU23900 lncRNA upstream 562160 51200931 ~ 51212373 (-) False AMCG00017232
TU23960 lncRNA upstream 657060 51295831 ~ 51296743 (-) True G19316
TU23977 lncRNA upstream 799109 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1908966 52547737 ~ 52548050 (-) True G19516
AMCG00017214 mRNA downstream 44788 50572116 ~ 50593081 (-) True AMCG00017214
AMCG00017208 mRNA downstream 111866 50523558 ~ 50526003 (-) True AMCG00017208
AMCG00017203 mRNA downstream 181757 50447385 ~ 50456112 (-) True AMCG00017203
AMCG00017199 mRNA downstream 253300 50377265 ~ 50384569 (-) True AMCG00017199
AMCG00017200 mRNA downstream 286070 50331771 ~ 50351799 (-) True AMCG00017200
AMCG00017215 mRNA upstream 4639 50643410 ~ 50652954 (-) True AMCG00017215
AMCG00017213 mRNA upstream 17348 50656119 ~ 50663669 (-) True AMCG00017213
AMCG00017216 mRNA upstream 31817 50670588 ~ 50671364 (-) True AMCG00017216
AMCG00017220 mRNA upstream 37480 50676251 ~ 50679198 (-) True AMCG00017220
AMCG00017218 mRNA upstream 53829 50692600 ~ 50694191 (-) True AMCG00017218
TU23267 other downstream 2143520 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 7773253 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9420638 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 12578930 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 792084 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 806816 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 806816 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 1217475 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 2219819 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile