RNA id: TU23870



Basic Information


Item Value
RNA id TU23870
length 847
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G19245
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51137293 ~ 51138835 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caACAATGTTACAAATTAATGCTGCAAAGTCTTCAAATAAGGAAGTTTGAATAATTtagcaaatgagaaaaaagaaagtttattttgacagcattcagatttttcttttgagtTGTAGACACTATACAGcaagtcttttaaaatgtaactggcATGCTTTTGTTCTTAATTGATATCCAGTTTAACAATTTAGATTTCcagattgtatgtatttaatatgatgACTACCACTTATTCTTtgcttaaataaaaattaaaggtTAGTGTGTGCATATCTGCGAATTCCtatgaaagtaaattaatatttttttgtattaacttCTGAGAGGACACCACATGAAtcatttaatgtgtggAAGCAGCTAAATTGAGGAAAGGTTCATTGTACATTATgacaaaatgaattacatttaattgacgTATCCAGCTTCCTAATATTTTCAGTGTCATCAGCCTTGgaaattctattaaaaaaacaactgtcagTTACAGTTTTTATGCCCATGTTCTGGGGGGTATAGGATATGGAGTTATACAAGCAgaaacagtataaataaaatattcatataaaaatagtctcttacaaaatatattctctaAATCATGGTTATTTTTCCATGTTAAAGAAATTTGTCTGGAGcataaacatttcttttttgttttcttttttgttttttgcaagaaCAGACATTGAgtaactttttatcagttaacAGTTGCTTATTAAATAGGACAGCTTTTGATTTTCCAGACAACTAGCAGCAAACAGCAGGGAAACACAATGAGCCCGAAACTTGTAGGAAACAATATAATATGTCCcccactttatatatatatatatatatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23810 lncRNA upstream 409142 50727740 ~ 50728151 (+) True G19195
TU23759 lncRNA upstream 496491 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 505659 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 574015 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 785346 50351252 ~ 50351947 (+) True G19062
TU23904 lncRNA downstream 156997 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 201078 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 426454 51565289 ~ 51571994 (+) True G19366
TU24151 lncRNA downstream 968113 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 1408914 52547749 ~ 52548031 (+) True G19515
AMCG00017227 mRNA upstream 68968 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017224 mRNA upstream 147440 50985259 ~ 50989853 (+) True AMCG00017224
AMCG00017225 mRNA upstream 164692 50960833 ~ 50972601 (+) True AMCG00017225
AMCG00017217 mRNA upstream 425801 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017209 mRNA upstream 465108 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017226 mRNA downstream 21084 51159919 ~ 51165248 (+) True AMCG00017226
AMCG00017229 mRNA downstream 30778 51169613 ~ 51176459 (+) True AMCG00017229
AMCG00017231 mRNA downstream 73344 51212179 ~ 51212391 (+) True AMCG00017231
AMCG00017230 mRNA downstream 75424 51214259 ~ 51214516 (+) True AMCG00017230
AMCG00017243 mRNA downstream 500802 51639637 ~ 51640615 (+) True AMCG00017243
TU23712 other upstream 575505 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 584308 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 1415822 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1733659 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6481195 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 1675418 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 1682226 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2197074 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2364597 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 2651712 53790547 ~ 53792694 (+) True G19829

Expression Profile