RNA id: TU23960



Basic Information


Item Value
RNA id TU23960
length 913
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G19316
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51295831 ~ 51296743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtctttaatttttcaatttattaGCTACAATGTagggctttatttttttttaagtttgttttttagattgtGGTGTTGCCTGAAAAATGAAACCAACTTAGTATGGCCTTACACTcgacaaacaaacaactgcaTTGTTATGATTCACCTGCAACAAGAGATGAAGCTTTTAGGGGAAAAAAGCCTCTGTTTTTGCGACCAGCTCTTTGTTTTCGTCCTCGTAACCTGATGGGATTCAAATTATTTCACTAGCACCTTGTGAagtgttttctgtgtctgtgatgtaatttattaatgtttgtagctttttatatttgtacatttcttaagagctttgtttttaaatattttatcagctTGTGGAAGTCTTCTTTTAGGAATCTGGTAACAGTAACTAAACAATACGTTCTGAGgccttgtttgcatttttttcaggCGCTCGGCAATTGGTTTTAGGAccgaaattatatatatatgttttattttttattttttttttctgtcatgattttgttttcaaggcTCTGGTGCTTACTGTAACAGGGCCTCAATTAGAAACATGCTCTCTTAAGACattaatacatgttattataattgattattcttgttattattcttgttattattattaagcagcTATGTGGTATAACCCTGCCATCatgccttttcttttattttggttatatGTACATTTCTAACAAGGTTTACTGTGGTTATCTATTGCAGTGTTTTAGTTACCAATGGGAATCTTGTATCAACTCCTCAGAATTGAAATACACTCAGATCAAACTTTACAAAATTgaactatttttttgttttgttttttgtacaaaatgtggGTTTCTttgttgtgctttatttttatatgttcaATCCATTAAATTGATCAGCTGCACAGGCGCTGTGTAAGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23900 lncRNA downstream 83458 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 130156 51165358 ~ 51165675 (-) True G19259
TU23757 lncRNA downstream 657060 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 657060 50637869 ~ 50638771 (-) False G19150
TU23747 lncRNA downstream 673392 50622181 ~ 50622439 (-) True G19141
TU23977 lncRNA upstream 141137 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1250994 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1352265 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1383210 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1472159 52768902 ~ 52769415 (-) True G19604
AMCG00017232 mRNA downstream 94894 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017228 mRNA downstream 140636 51139838 ~ 51155195 (-) True AMCG00017228
AMCG00017222 mRNA downstream 339989 50916408 ~ 50955842 (-) True AMCG00017222
AMCG00017223 mRNA downstream 397458 50898113 ~ 50898373 (-) True AMCG00017223
AMCG00017219 mRNA downstream 542490 50731649 ~ 50753341 (-) True AMCG00017219
AMCG00017233 mRNA upstream 1617 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017235 mRNA upstream 47616 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017236 mRNA upstream 68446 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017234 mRNA upstream 133944 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017239 mRNA upstream 166770 51463513 ~ 51476059 (-) True AMCG00017239
TU23267 other downstream 2801482 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8431215 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 10078600 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 13236892 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 134112 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 148844 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 148844 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 559503 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1561847 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile