RNA id: TU23977


Basic Information

Item Value
RNA id TU23977
length 214
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G19330
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51437880 ~ 51438093 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGAGCTGCCGCGCCGCTCCTGTCGGCTTCTCCGTTCATTTCGATGTGTTCAGTATCCATCTTCCGTCAGAAAAACGCAGAAAATACAGCGAGAGCAGCGGGTGCAAGAGAGAGAAACTCCGCGTCTGCCTGAGGGAGCCGGGCTGCTTTCTCCGAATGGGGGCGGGATTGCAGCACATCCGGAACAGCGCGCTGCGgccgcacagacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23960 lncRNA downstream 141137 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 225507 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 272205 51165358 ~ 51165675 (-) True G19259
TU23757 lncRNA downstream 799109 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 799109 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 1109644 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1210915 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1241860 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1330809 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 1571785 53009878 ~ 53010218 (-) True G19663
AMCG00017234 mRNA downstream 2641 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017236 mRNA downstream 26304 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017235 mRNA downstream 74659 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017233 mRNA downstream 110563 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017232 mRNA downstream 236943 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017239 mRNA upstream 25420 51463513 ~ 51476059 (-) True AMCG00017239
AMCG00017240 mRNA upstream 58126 51496219 ~ 51525354 (-) True AMCG00017240
AMCG00017242 mRNA upstream 133263 51571356 ~ 51605585 (-) True AMCG00017242
AMCG00017244 mRNA upstream 185959 51624052 ~ 51627775 (-) True AMCG00017244
AMCG00017241 mRNA upstream 229455 51667548 ~ 51685160 (-) True AMCG00017241
TU23976 other downstream 2812 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 2943531 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8573264 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 10220649 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 13378941 38027483 ~ 38058939 (-) False AMCG00016959
TU23984 other upstream 7494 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 7494 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 418153 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1420497 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1945247 53383340 ~ 53387709 (-) True G19730

Expression Profile