RNA id: TU23985


Basic Information

Item Value
RNA id TU23985
length 568
RNA type TUCP
GC content 0.52
exon number 4
gene id G19335
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51445587 ~ 51449786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCCGTCACGGGAGGGACGAGAAGTGAGGAAGTGGGCGAAGCGAGAGACGAGAGCCGCCATAAATGGAGAGAAGTTGCGGATCGTCCACTATGTCAGACAGCTACCATGATCAGCTGGTCCAGGACTGCCAGTTTCTGAGGTGTGACAAGAGGCTCAACACAGAGTTGGTTGACAAACTGGTTCTGCAGCTGAACCGAATTTACCCTCAAATCCTGAGTGACAAGGAGGCGCACAAGTTCAGGAACCTGAAAGTCCCCACGGGTGTCCGACTGGCCGAGCTCCTGGGTCACCTGACGCAGAAAGGCGAGGAGGCCTGTCACGAACTCTACAGAGCTCTACAGATCCACGCGGAGGACGTCTACCTCGGCCTCCCCAGCAGAAGGAGAAAGAGGGGTCCGTTTTTCTTCATCAGTTGCTTCAGCGTTGCGGTCGGGATCGCCTTTCTATATTATTATGGTGCAGGTGAGTCACTGCCtccttttcagttttgttcaggGAATTCAGGTCACAAAATATGTGTCAgtggaacatttttcttttctccccgttttaatttgttatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 7494 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 148844 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 233214 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 279912 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 806816 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 1097951 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1199222 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1230167 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1319116 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 1560092 53009878 ~ 53010218 (-) True G19663
AMCG00017234 mRNA downstream 10348 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017236 mRNA downstream 34011 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017235 mRNA downstream 82366 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017233 mRNA downstream 118270 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017232 mRNA downstream 244650 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017239 mRNA upstream 13727 51463513 ~ 51476059 (-) True AMCG00017239
AMCG00017240 mRNA upstream 46433 51496219 ~ 51525354 (-) True AMCG00017240
AMCG00017242 mRNA upstream 121570 51571356 ~ 51605585 (-) True AMCG00017242
AMCG00017244 mRNA upstream 174266 51624052 ~ 51627775 (-) True AMCG00017244
AMCG00017241 mRNA upstream 217762 51667548 ~ 51685160 (-) True AMCG00017241
TU23976 other downstream 10519 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 2951238 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8580971 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 10228356 41216651 ~ 41217231 (-) True G17421
TU21143 other downstream 13386648 38054665 ~ 38058939 (-) False AMCG00016959
TU24132 other upstream 406460 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1408804 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1933554 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1936310 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1936310 53386096 ~ 53387709 (-) False G19730

Expression Profile