RNA id: TU24212


Basic Information

Item Value
RNA id TU24212
length 314
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G19516
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52547737 ~ 52548050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtccaattgagaggaagccattcgccccatcgtgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccggctgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 1109644 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1250994 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1335364 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1382062 51165358 ~ 51165675 (-) True G19259
TU23757 lncRNA downstream 1908966 50637315 ~ 50638771 (-) True G19150
TU24251 lncRNA upstream 100958 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 131903 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 220852 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 461828 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 657915 53205965 ~ 53215336 (-) False AMCG00017299
AMCG00017269 mRNA downstream 9483 52522749 ~ 52538254 (-) True AMCG00017269
AMCG00017265 mRNA downstream 73396 52450116 ~ 52474341 (-) True AMCG00017265
AMCG00017266 mRNA downstream 119684 52416160 ~ 52428053 (-) True AMCG00017266
AMCG00017268 mRNA downstream 143946 52392806 ~ 52403791 (-) True AMCG00017268
AMCG00017262 mRNA downstream 172877 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017270 mRNA upstream 17246 52565296 ~ 52566709 (-) True AMCG00017270
AMCG00017272 mRNA upstream 47630 52595680 ~ 52605465 (-) True AMCG00017272
AMCG00017273 mRNA upstream 61221 52609271 ~ 52616058 (-) True AMCG00017273
AMCG00017271 mRNA upstream 73715 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017274 mRNA upstream 121307 52669357 ~ 52670496 (-) True AMCG00017274
TU24132 other downstream 687595 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1097951 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1097951 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1112669 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4053388 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 310540 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 835290 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 838046 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 838046 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 838046 53386096 ~ 53387709 (-) False G19730

Expression Profile