RNA id: TU24251


Basic Information

Item Value
RNA id TU24251
length 986
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G19548
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52649008 ~ 52665182 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGGACTGTGTTGCGCCTCAGCAAACTGATGAAGGAAATAAAGGCTCCTGCCGCTGCACCGGAGGATTGACGCTTCAACACCGAGTCCCGAGCAGAGCTGGCACCGCGGATGCGAGAGGGTCCAGGGCGGCGAGGATGCATAGGTAATGCCCAGTGAGCACTCCGGGGGGCCATGTCTGACGAGGCGAACTCAGGGAGTGATCTGGACCCCGACCTCGACCCCGAGGAAGAGGAtctggaagaggaagaggaggagatggagggcgAGAACGACGGAGACGACGAGGAGGATGGCACCGTGTAACCTGGCAAGCCAGTGACTTACTGTGCTGATGAAAGACTGGTGTGACTCGAGGGCTGTCGAATACCAAATCCACCAGGACTTGTCTGTTTTGTCATCTGTGCgggtgtatttttaaatgtacctaGCCACAAGGATGAGGAGGTGAAATTGAATTCTCATGGGAAGGACTCCCCGTTGTGTGCCGTGCCGTGCCCCTTCTCCACGGGCTCGGATCACAGATCACGGATAGTTTGAAGTTGAATGCAGCATtttagcttttttgttgttgttgttgttgttgttgtttaacatGAGACCGTCGGTGTATTGTGTGTCAAAGATTTACATCGGGTGAACAAAATCTTTCAAGACCCCTGGGGGAGAGGAACGAGGTGTGGTTTTGCAGAGAGACGAAAGTTTTGTAACTGAAGTGGGGTGGGGAATCGATTGAGGTGAAATCTCCACTGCGACTGAATGCGAACACTGGGTATGaacatacagtgcctatagagaGTCTGCACCCCCTCTACTGCCATGTATagactggaattaaaatgcattaaaatccttttaattttttcacttATCTACACATCCCACCCCACAGCTTCCAAGTGgaatgtattaaacataaaaccTACAAATAGAAACCTGGACCTCTTTGAATGCATTTAGTGTCTTCCTcgtgtttattcatgtttt

Function

GO:      GO:0008536

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24212 lncRNA downstream 100958 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1210915 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1352265 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1436635 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1483333 51165358 ~ 51165675 (-) True G19259
TU24254 lncRNA upstream 14771 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 103720 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 344696 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 540783 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 573024 53238206 ~ 53238409 (-) True G19687
AMCG00017271 mRNA downstream 11402 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017273 mRNA downstream 32950 52609271 ~ 52616058 (-) True AMCG00017273
AMCG00017272 mRNA downstream 43543 52595680 ~ 52605465 (-) True AMCG00017272
AMCG00017270 mRNA downstream 82299 52565296 ~ 52566709 (-) True AMCG00017270
AMCG00017269 mRNA downstream 110754 52522749 ~ 52538254 (-) True AMCG00017269
AMCG00017274 mRNA upstream 4175 52669357 ~ 52670496 (-) True AMCG00017274
AMCG00017278 mRNA upstream 80125 52745307 ~ 52745789 (-) True AMCG00017278
AMCG00017277 mRNA upstream 80877 52746059 ~ 52751516 (-) True AMCG00017277
AMCG00017276 mRNA upstream 97929 52763111 ~ 52767644 (-) True AMCG00017276
AMCG00017284 mRNA upstream 106947 52772129 ~ 52795850 (-) True AMCG00017284
TU24132 other downstream 788866 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1199222 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1199222 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1213940 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4154659 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 193408 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 718158 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 720914 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 720914 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 720914 53386096 ~ 53387709 (-) False G19730

Expression Profile