RNA id: TU24316


Basic Information

Item Value
RNA id TU24316
length 514
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G19604
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52768902 ~ 52769415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGACTGCGCTGCACACACAGCAGTATGGAAAATATCAGAGCAGTATAAatctatatatgtttgtttgtctgttgaTTATATTTTCCATACTGCCGTGGGCTCAGCCTGCGTTCGAGGGCTGCGGCGCTCTGGTTGGCTTCGGGACTCGTGCCCTCTGCCAGGAGGACAGTGGCATGCATGGGCGGCTGCGAGAGGAGAAAACGCTCTTTCAGTCCGAGAATTACCAACGCACGCAGAGGGGACGCTGACTGACCTCCTGACAGAGACGTCAGCACACAGGCCGTTAACTTCGGTATGAAACGgcacagtgtctctgtgttcatCAGCGACGGTGTCTTCACCTCCGAAGTGAAAGCACCCTAGACAGACCCGCTCCGTCTCTGACCAAGGACCGGCTGTGACGGCACGTCTCCGGCACAAACACTGCATTGTCTGAGTCTCTGTTTCGGTCAGGGggattactgtatttttttttccttttttctttataataaaaagCCCATTGAAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24254 lncRNA downstream 77716 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 103720 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 220852 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1330809 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1472159 51295831 ~ 51296743 (-) True G19316
TU24389 lncRNA upstream 240463 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 436550 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 468791 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 648770 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 682703 53452118 ~ 53527652 (-) False AMCG00017313
AMCG00017276 mRNA downstream 1258 52763111 ~ 52767644 (-) True AMCG00017276
AMCG00017277 mRNA downstream 17386 52746059 ~ 52751516 (-) True AMCG00017277
AMCG00017278 mRNA downstream 23113 52745307 ~ 52745789 (-) True AMCG00017278
AMCG00017274 mRNA downstream 98406 52669357 ~ 52670496 (-) True AMCG00017274
AMCG00017271 mRNA downstream 131296 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017284 mRNA upstream 2714 52772129 ~ 52795850 (-) True AMCG00017284
AMCG00017283 mRNA upstream 34305 52803720 ~ 52806431 (-) True AMCG00017283
AMCG00017286 mRNA upstream 42432 52811847 ~ 52814845 (-) True AMCG00017286
AMCG00017282 mRNA upstream 48624 52818039 ~ 52821117 (-) True AMCG00017282
AMCG00017285 mRNA upstream 69088 52838503 ~ 52840644 (-) True AMCG00017285
TU24132 other downstream 908760 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1319116 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1319116 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1333834 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4274553 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 89175 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 613925 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 616681 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 616681 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 616681 53386096 ~ 53387709 (-) False G19730

Expression Profile