RNA id: TU24389


Basic Information

Item Value
RNA id TU24389
length 341
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G19663
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53009878 ~ 53010218 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcccttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccaggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctag

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24316 lncRNA downstream 240463 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 318692 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 344696 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 461828 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1571785 51437880 ~ 51438093 (-) True G19330
TU24402 lncRNA upstream 195747 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 227988 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 407967 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 441900 53452118 ~ 53527652 (-) False AMCG00017313
TU24653 lncRNA upstream 843765 53853983 ~ 53854628 (-) True G19873
AMCG00017291 mRNA downstream 80039 52924823 ~ 52929839 (-) True AMCG00017291
AMCG00017293 mRNA downstream 91934 52912823 ~ 52917944 (-) True AMCG00017293
AMCG00017294 mRNA downstream 97235 52904340 ~ 52912643 (-) True AMCG00017294
AMCG00017296 mRNA downstream 109753 52884475 ~ 52900125 (-) True AMCG00017296
AMCG00017295 mRNA downstream 128865 52868327 ~ 52881013 (-) True AMCG00017295
AMCG00017299 mRNA upstream 184615 53194833 ~ 53212519 (-) True AMCG00017299
AMCG00017298 mRNA upstream 272247 53282465 ~ 53286478 (-) True AMCG00017298
AMCG00017302 mRNA upstream 329288 53339506 ~ 53343302 (-) True AMCG00017302
AMCG00017309 mRNA upstream 382490 53392708 ~ 53396408 (-) True AMCG00017309
AMCG00017310 mRNA upstream 386402 53396620 ~ 53396829 (-) True AMCG00017310
TU24337 other downstream 143459 52858590 ~ 52866419 (-) False AMCG00017292
TU24132 other downstream 1149736 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1560092 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1560092 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1574810 51430855 ~ 51435068 (-) False AMCG00017234
TU24480 other upstream 373122 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 375878 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 375878 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 375878 53386096 ~ 53387709 (-) False G19730
TU24580 other upstream 665865 53676083 ~ 53728883 (-) True G19808

Expression Profile