RNA id: TU24425


Basic Information

Item Value
RNA id TU24425
length 204
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G19687
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53238206 ~ 53238409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCTGCTGGAAGGCGAAGTGGAAGCCAGACTTGTAGTCCGTGGTGCCCTTGGCCTCCATTTTTGCCACAGCCTCCTTGAAGACCTTCTTGTTGCGCACGTTGGCTTGAACCAGGTGCTCGAAACAGGGCACTGCGGCCTGGGCCTTCTCACTGAACTgcacagggagagggagagagagagagagagagagagagagagaga

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24402 lncRNA downstream 22870 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 227988 53009878 ~ 53010218 (-) True G19663
TU24316 lncRNA downstream 468791 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 547020 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 573024 52649008 ~ 52665182 (-) True G19548
TU24492 lncRNA upstream 179776 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 213709 53452118 ~ 53527652 (-) False AMCG00017313
TU24653 lncRNA upstream 615574 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 626501 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 655927 53894336 ~ 53914876 (-) True G19918
AMCG00017299 mRNA downstream 25687 53194833 ~ 53212519 (-) True AMCG00017299
AMCG00017291 mRNA downstream 308367 52924823 ~ 52929839 (-) True AMCG00017291
AMCG00017293 mRNA downstream 320262 52912823 ~ 52917944 (-) True AMCG00017293
AMCG00017294 mRNA downstream 325563 52904340 ~ 52912643 (-) True AMCG00017294
AMCG00017296 mRNA downstream 338081 52884475 ~ 52900125 (-) True AMCG00017296
AMCG00017298 mRNA upstream 44056 53282465 ~ 53286478 (-) True AMCG00017298
AMCG00017302 mRNA upstream 101097 53339506 ~ 53343302 (-) True AMCG00017302
AMCG00017309 mRNA upstream 154299 53392708 ~ 53396408 (-) True AMCG00017309
AMCG00017310 mRNA upstream 158211 53396620 ~ 53396829 (-) True AMCG00017310
AMCG00017313 mRNA upstream 286233 53524642 ~ 53531131 (-) True AMCG00017313
TU24337 other downstream 371787 52858590 ~ 52866419 (-) False AMCG00017292
TU24132 other downstream 1378064 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1788420 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1788420 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1803138 51430855 ~ 51435068 (-) False AMCG00017234
TU24480 other upstream 144931 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 147687 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 147687 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 147687 53386096 ~ 53387709 (-) False G19730
TU24580 other upstream 437674 53676083 ~ 53728883 (-) True G19808

Expression Profile