RNA id: TU24478


Basic Information

Item Value
RNA id TU24478
length 1590
RNA type TUCP
GC content 0.57
exon number 2
gene id G19730
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53383340 ~ 53387709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTTCAaagatgttttaatataaagctAAAACACCAGAAATAATGCAGTCACCAAAGAACAAGGCACCTAGGCAACAAGGACAAATTAAGGGTGActaattttaacacaaaacagataCAAACAATTATAAGACTGGATGATTCGTTTCATTGCCGAGTTGTGGGACACCGATGAAGAGAACAGCCTGCAGCAGACCCTGATTGGACGGAAGTGAATTTAGAAGCCCATTTCCCTCCACAACACAAAATTCAGCTCAGTATACACTGCAAGAGCCAATCTTAGGGCAGGCTCATCTTGCCCTCCAGTGGATGTTTGACAAACCTAAATGCAACGCTTCAGACAACTCCAGGCAACAACCgtgagaattaaaataaaaacacgtgTCGCTGGATCTTCTCTCTGCCTGGATGCCTGCTGCAATGGGCGAATTAAAAAAACGATTAACAGAGCATTACTGGGCCAAGTGGAACCATGACAGGGGTGTTCTACTGCAGCGGCTCCCAAACACCGGTTTTTAAAAATCCATCAAAATATTCGGTATTGGTGTTGCATTTTTATCGGAAATTACATGTTTTCCTTTGTATGAATGCTATGAATCGCAGTGTGGGAAATCGTTTGGCAGGCGCTGGCTTGAGTCCAGAGACCCCAAGAGTCTTCCGGTGCCCAGTCCCTGTAGAGGCCCCCTCGATTCCCCCGCActacagtggggggggggggtggcatcCAGCCAAGACTCAGATGTCCTTCTGCATCCAGAAGATCGGCTGTCCTTTAGCATCCCTGTAGGGCGTCTCCAGTAACGTCTTAGAGGAGGGAAGGGCCAAGGAGGCTGAGGACCGGGTGTGggcagagggaggaggaggaggaggaggaggaggaggggcagAGGTACTGAGGAAGGAAGGGACGTTCACAGCAGAGACATCTGGTTGAGGGGAGGCAGGAGGTACAGGGCGAGTGGCTAAGGGAGGAGCTACAGGGGAGTGAGGGGCTACAGAGTGGGTAGGCCTCTCCCCAGGCAGCGGCAGGGATGAGGGTGGCGGGGTGGGGACCGGACCCCTCCAGTCACAATCATCGTCTTCGTCTCCTGCCGCTGGCCGGGAGAACCTCAGCAGTGCCTCCATGGGGACGAAGGCGGTCATGGCCCCGGCGCTCTGCACGGGCCGCGAGAGGACGAAGCCCAGGCGGGCGTAGAAGTGCTGCTTATCGTGGGTGGTCAGGCAGAGCCGGCGGAAGCCCCGGCCCCTGGCGTACCTCTCGGCCTCCTCCATCAGCTGCCGCCCGTAGCCCTTGCCCCGTTCGTCGAGTGCCACCACCACCGACTCGACGAACAGACTGCTCCTCTGCCCCACCACTCGGGACAGCCTGGCGTGGCCCAGCAGCTTCTCGCCCTGCCCCCCGGCCCCCCGCCGCAGCAGCACCAGACACAGAGGGAAGTCGTCGCAGGATTTCTCCAGGGAGTGAATCCGGGCCCCTTGACTGCGCTGCCACTCTGCGTTCATGAGGTCGGCGCAGGCGCCCAGCAGGTCTGCCCGCCGGTGTAAGGGCACCGCCCACACCTGCCCATCACCCCTGGAGCCGCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24425 lncRNA downstream 147687 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 170760 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 375878 53009878 ~ 53010218 (-) True G19663
TU24316 lncRNA downstream 616681 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 694910 52679953 ~ 52691186 (-) True G19551
TU24492 lncRNA upstream 30476 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 64409 53452118 ~ 53527652 (-) False AMCG00017313
TU24653 lncRNA upstream 466274 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 477201 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 506627 53894336 ~ 53914876 (-) True G19918
AMCG00017302 mRNA downstream 42794 53339506 ~ 53343302 (-) True AMCG00017302
AMCG00017298 mRNA downstream 99618 53282465 ~ 53286478 (-) True AMCG00017298
AMCG00017299 mRNA downstream 173577 53194833 ~ 53212519 (-) True AMCG00017299
AMCG00017291 mRNA downstream 456257 52924823 ~ 52929839 (-) True AMCG00017291
AMCG00017293 mRNA downstream 468152 52912823 ~ 52917944 (-) True AMCG00017293
AMCG00017309 mRNA upstream 4999 53392708 ~ 53396408 (-) True AMCG00017309
AMCG00017310 mRNA upstream 8911 53396620 ~ 53396829 (-) True AMCG00017310
AMCG00017313 mRNA upstream 136933 53524642 ~ 53531131 (-) True AMCG00017313
AMCG00017312 mRNA upstream 148138 53535847 ~ 53557888 (-) True AMCG00017312
AMCG00017315 mRNA upstream 225767 53613476 ~ 53626349 (-) True AMCG00017315
TU24337 other downstream 519677 52858590 ~ 52866419 (-) False AMCG00017292
TU24132 other downstream 1525954 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1936310 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1936310 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1951028 51430855 ~ 51435068 (-) False AMCG00017234
TU24580 other upstream 288374 53676083 ~ 53728883 (-) True G19808
TU24599 other upstream 375289 53762998 ~ 53764376 (-) True G19824
TU24740 other upstream 565585 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 644930 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 729555 54117264 ~ 54154094 (-) True G19998

Expression Profile