RNA id: TU24492


Basic Information

Item Value
RNA id TU24492
length 854
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G19741
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53418185 ~ 53419077 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCttgaattcaatttatttttttatttttcaacaaatataGAATTCATGATCTGCGGAGTCACTTTGGCCTTTGGATGCCATTCATCTGCACTGAGACCAGCTGAGCAGAAACTGAGCCCAGTGCTCACCGGCTCACCCCCCACACCACAGCCTGAGGAGCAAGAGCCTCCGACCGGAGGAGCCCGTCCAGCTGCGACAGCCTCCTCTTTCGTAGTTTCGgttcagttttattaattttgctcCCTTTCTCGATGGAAagatattcaattaaaaataatatccttCACTTGTTCACGCGTTTATCAGACGGCCCGTAAGGCACCCGTATGCATCGGATACACAGCCTCTGTTATTCAATGCATAAAGATACTCTACTGGGATGTGtggatgtgtttgtatatatgcataaaaccgcatacacacactataaatagaaaaactacaaaagggNNtgtaaactttttaattttcctttttaaaaatcactgcTGGTCTCCCACTCAATAAATTAGAGTAAAATAATCAATCCACAATTtgaacagtttaaaatgtctatAAACATTCTCTAGactgtgattttatttcctcTCCCCAGCGGCTGTTTTATGTCATcgatgttaaataaaaaaataacaaatgaaacaCAGTCTTCTGCGTCACTTGCGAAGTCCCAGATCGGAAGCAGCATTCTTCAAGCGAGGGAGTGGGGTAGTGTTGTCCCAGAATGGGTCCCCTCGTCGGCCCATGGCCCCTCGTCAGGACTGTGGCCCCTCACATGACATCGGCCCGCTTGTCCCTCACTTTGTTCCTCTGTTTCGTCCTGGCTTTGAATGCGGCCGAGTTGTACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24425 lncRNA downstream 179776 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 202849 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 407967 53009878 ~ 53010218 (-) True G19663
TU24316 lncRNA downstream 648770 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 726999 52679953 ~ 52691186 (-) True G19551
TU24529 lncRNA upstream 33041 53452118 ~ 53527652 (-) False AMCG00017313
TU24653 lncRNA upstream 434906 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 445833 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 475259 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 477747 53896824 ~ 53897452 (-) True G19920
AMCG00017310 mRNA downstream 21356 53396620 ~ 53396829 (-) True AMCG00017310
AMCG00017309 mRNA downstream 21777 53392708 ~ 53396408 (-) True AMCG00017309
AMCG00017302 mRNA downstream 74883 53339506 ~ 53343302 (-) True AMCG00017302
AMCG00017298 mRNA downstream 131707 53282465 ~ 53286478 (-) True AMCG00017298
AMCG00017299 mRNA downstream 205666 53194833 ~ 53212519 (-) True AMCG00017299
AMCG00017313 mRNA upstream 105565 53524642 ~ 53531131 (-) True AMCG00017313
AMCG00017312 mRNA upstream 116770 53535847 ~ 53557888 (-) True AMCG00017312
AMCG00017315 mRNA upstream 194399 53613476 ~ 53626349 (-) True AMCG00017315
AMCG00017317 mRNA upstream 207997 53627074 ~ 53632447 (-) True AMCG00017317
AMCG00017318 mRNA upstream 219485 53638562 ~ 53642822 (-) True AMCG00017318
TU24480 other downstream 30476 53383340 ~ 53387709 (-) True G19730
TU24476 other downstream 30476 53386096 ~ 53387709 (-) False G19730
TU24477 other downstream 30476 53386096 ~ 53387709 (-) False G19730
TU24478 other downstream 30476 53386096 ~ 53387709 (-) False G19730
TU24337 other downstream 551766 52858590 ~ 52866419 (-) False AMCG00017292
TU24580 other upstream 257006 53676083 ~ 53728883 (-) True G19808
TU24599 other upstream 343921 53762998 ~ 53764376 (-) True G19824
TU24740 other upstream 534217 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 613562 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 698187 54117264 ~ 54154094 (-) True G19998

Expression Profile