RNA id: TU24599


Basic Information

Item Value
RNA id TU24599
length 710
RNA type TUCP
GC content 0.65
exon number 4
gene id G19824
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53762998 ~ 53764376 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggcgaatgggctcctctcgactggacactttctcatgttcttatgttcttatgtaatgtCGGTGTTCTGATTGGCTGCTCTGTTCCCTGGCAGGTACATGTCGCTGGCAGTGGTGTATGCTGGGACAGGTGTGGGGCAGGCAGTCCTCCTGGCCGCAGGCTGCAGTGACGGAGCAGTGAGgttgTTCTCTCTGGGTCTGTCCCCCCGGCGGCTGGATCTGGTTTGGGAGTCATTTCACCACCAGCGCTGTGTGCTCTCTGTCGCCCCCTACAGCCACTGCAGTGCCCTGGGCAGCAGGAGGCAGTTCCTATGCAGCGCTGCCACAGACGGGCGGATCGCAGTGTGGGACCTCACTGAGGTAGTGGTGGGGGGCAGTTGGCTCTCTGCGTCCCCCCGGTGCCAGGGTTTGCTCCCCAGCCTCTGTGTTCGGGCTCACCAGAGTGGGGTGAACAGCCTGGCAgtgtgggaggtgggggggcggcTGCAGCTGGCCAGCGGGGGGGACGACGGCAGCCTGACGGTCAGCACCATCGGTGTGCAGTACCCACCCGGGGACACAGAGGGGGCCCACAGCCACAGCGCCGTCTCCCTGACCCTGGACGGCCAGACTTCCGTCCCCTGCGCCCATGCCGCCCCGCTGACCGCCCTGCAACTCCTGACACCCGACCTCCTGGCCACGACGTCAGCGGACCAGAGGCTGCTGCTGTG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 235346 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 343921 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 524589 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 547662 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 752780 53009878 ~ 53010218 (-) True G19663
TU24653 lncRNA upstream 89607 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 100534 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 129960 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 132448 53896824 ~ 53897452 (-) True G19920
TU24731 lncRNA upstream 139919 53904295 ~ 53949032 (-) True G19923
AMCG00017320 mRNA downstream 47444 53711335 ~ 53715554 (-) True AMCG00017320
AMCG00017316 mRNA downstream 99540 53661170 ~ 53663458 (-) True AMCG00017316
AMCG00017318 mRNA downstream 120176 53638562 ~ 53642822 (-) True AMCG00017318
AMCG00017317 mRNA downstream 130551 53627074 ~ 53632447 (-) True AMCG00017317
AMCG00017315 mRNA downstream 136649 53613476 ~ 53626349 (-) True AMCG00017315
AMCG00017322 mRNA upstream 18450 53782826 ~ 53783724 (-) True AMCG00017322
AMCG00017329 mRNA upstream 61182 53825558 ~ 53827875 (-) True AMCG00017329
AMCG00017328 mRNA upstream 71274 53835650 ~ 53851974 (-) True AMCG00017328
AMCG00017327 mRNA upstream 92720 53857096 ~ 53864544 (-) True AMCG00017327
AMCG00017333 mRNA upstream 120275 53884651 ~ 53890648 (-) True AMCG00017333
TU24580 other downstream 34115 53676083 ~ 53728883 (-) True G19808
TU24480 other downstream 375289 53383340 ~ 53387709 (-) True G19730
TU24476 other downstream 375289 53386096 ~ 53387709 (-) False G19730
TU24477 other downstream 375289 53386096 ~ 53387709 (-) False G19730
TU24478 other downstream 375289 53386096 ~ 53387709 (-) False G19730
TU24740 other upstream 188918 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 268263 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 352888 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 377762 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 602408 54366784 ~ 54368016 (-) True G20064

Expression Profile