RNA id: TU24723


Basic Information

Item Value
RNA id TU24723
length 222
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G19920
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53896824 ~ 53897452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTCCATATCGACTCTCGGGTGTCGAGCCGCTACGCACACACCGTGATCACCAGCCATGTGGCCAACTGCGCCGACCAGAGCAGGGAGGTGCTGTTCGAAGTGGAGCTGCCCAAGAACGCCTTCATCAGCAACTTCAGCATGACGGTGGGGGGCAAGACCTACGTGGGTGAGGTGAAGGAGAAAGGTGGCAAGACAGCAGTACGACAAGGCAATGTCCCGC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24655 lncRNA downstream 28047 53864910 ~ 53868777 (-) True G19875
TU24653 lncRNA downstream 42196 53853983 ~ 53854628 (-) True G19873
TU24529 lncRNA downstream 369172 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 477747 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 658415 53238206 ~ 53238409 (-) True G19687
TU24731 lncRNA upstream 6843 53904295 ~ 53949032 (-) True G19923
TU24726 lncRNA upstream 51306 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA upstream 51306 53948758 ~ 54041033 (-) False G19923
TU24770 lncRNA upstream 157384 54054836 ~ 54055099 (-) True G19957
TU24806 lncRNA upstream 159433 54056885 ~ 54057927 (-) True G19992
AMCG00017333 mRNA downstream 6176 53884651 ~ 53890648 (-) True AMCG00017333
AMCG00017327 mRNA downstream 32280 53857096 ~ 53864544 (-) True AMCG00017327
AMCG00017328 mRNA downstream 44850 53835650 ~ 53851974 (-) True AMCG00017328
AMCG00017329 mRNA downstream 68949 53825558 ~ 53827875 (-) True AMCG00017329
AMCG00017322 mRNA downstream 113100 53782826 ~ 53783724 (-) True AMCG00017322
AMCG00017334 mRNA upstream 55968 53953420 ~ 53957473 (-) True AMCG00017334
AMCG00017332 mRNA upstream 63369 53960821 ~ 53972368 (-) True AMCG00017332
AMCG00017338 mRNA upstream 76681 53974133 ~ 53986709 (-) True AMCG00017338
AMCG00017339 mRNA upstream 98653 53996105 ~ 54008920 (-) True AMCG00017339
AMCG00017337 mRNA upstream 160577 54058029 ~ 54062385 (-) True AMCG00017337
TU24599 other downstream 132448 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 167941 53676083 ~ 53728883 (-) True G19808
TU24476 other downstream 509115 53386096 ~ 53387709 (-) False G19730
TU24740 other upstream 55842 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 135187 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 219812 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 244686 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 469332 54366784 ~ 54368016 (-) True G20064

Expression Profile