RNA id: TU24770


Basic Information

Item Value
RNA id TU24770
length 264
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G19957
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54054836 ~ 54055099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcCTCTCGCGAGCTTTCCGTTTCcccagctgaatgaagtagcccttggttctTTTCTTCatcatctcccaccactctatgggagaatcaaaaaggtccttcagggtcctccactcctcgaggCGTCTGCTAAAGGTCTTAATCACACGAGGGTCatcgagcagagaggtgttgagcttccagaccccaggccccgaCTCCCGTGTGCTCGGAATGAGCACCTCTGTCGTCAGGAgtctgtggtctgaaaagaagaccgcctccg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0030903 notochord development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24726 lncRNA downstream 13803 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 13803 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 105804 53904295 ~ 53949032 (-) True G19923
TU24721 lncRNA downstream 139960 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA downstream 157384 53896824 ~ 53897452 (-) True G19920
TU24806 lncRNA upstream 1786 54056885 ~ 54057927 (-) True G19992
TU24926 lncRNA upstream 314653 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 397522 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 439836 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 455137 54510236 ~ 54510488 (-) True G20118
AMCG00017339 mRNA downstream 45916 53996105 ~ 54008920 (-) True AMCG00017339
AMCG00017338 mRNA downstream 68127 53974133 ~ 53986709 (-) True AMCG00017338
AMCG00017332 mRNA downstream 82468 53960821 ~ 53972368 (-) True AMCG00017332
AMCG00017334 mRNA downstream 97363 53953420 ~ 53957473 (-) True AMCG00017334
AMCG00017333 mRNA downstream 164188 53884651 ~ 53890648 (-) True AMCG00017333
AMCG00017337 mRNA upstream 2930 54058029 ~ 54062385 (-) True AMCG00017337
AMCG00017341 mRNA upstream 9270 54064369 ~ 54091597 (-) True AMCG00017341
AMCG00017345 mRNA upstream 40765 54095864 ~ 54097123 (-) True AMCG00017345
AMCG00017344 mRNA upstream 52604 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017343 mRNA upstream 72588 54127687 ~ 54143175 (-) True AMCG00017343
TU24763 other downstream 20675 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 97496 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 290460 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 325953 53676083 ~ 53728883 (-) True G19808
TU24476 other downstream 667127 53386096 ~ 53387709 (-) False G19730
TU24816 other upstream 62165 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 87039 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 311685 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 590738 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 645471 54700570 ~ 54704280 (-) False G20193

Expression Profile