RNA id: TU24923


Basic Information

Item Value
RNA id TU24923
length 1131
RNA type TUCP
GC content 0.63
exon number 2
gene id G20064
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54366784 ~ 54368016 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAAGGCCATGTGCTCCAGGAAGAAGCCGCAGCCATTGTTCCTCTCGGTCTCGTAGCGGCTGCCTGCATTGATCCACACGCACAGTGCAGGTGGGGTGGCCAGTCTCCTGGGAGGCGACGCGGAGGCCGTTGTCCAGTGTGGTGAGCTGCGTCTCCGGGGAGCTGCGCAGACACTGCGCATATGACAAGCCCGACTGTCCTCGGCGCAGACACAGCAGGGCCGGCTGCACaggcagacacagagagagggacattAGGAGAGGGAGACGTATTAAGAtggggagacacagagacagactttaggagagggacacagagagcaaaaacatgcttaaaaatataatattaagaaGTATTCTTCCAGGTCTCTGTAGTAGCAAAAGCTGTGGGTCGGGAAGCTCCAGTGGGTGTGAGTGAGTCCCGCACCCCGACACACTGCGGCTCTCAGCCCAGCCTCACCCACAGGTCCGCCGCGGATCTCACACAGAGGCTCCGCAGGTTAAAGACAGACAGGGAGGCGGAGCGGCGATGCCAGCGGGCGTGTTGCTGTCTGTATCGCACTCGGAGGGCTGCTTTAGTGGGGCTGTTTCAGGAGCCGGGCTGGGGTCCAGAGTAAAACGCGCCCCGCAGCCCTGGAGCCCAGTGAGGCCGCAATGCAAACACACGGAACCAGGACTTGACTGCACAGCCCCGGCgctgtctgtccgtccgtccgtctgtctgtctgactgtgaCCTTGCTGCGCTGCCGGCTGCAGACTGCTCTCTATACCGCCCAAACACGGCCGTGTCCCGGGGAGCCGATACGGGTGAAACGCCGGGTTTAACCAGCCCCCCGGCCCGCCGTGTTCAATAACCCCTCCGTCTCGGTGACCTTCCTACGCCGCGGCGAGACACGGGCCGGGCCGCCCGGCGCAGGAAGGTGACTTTCAGAGGGAGTTTCGGACGGGCAGTGCCGAGTACCGAGCCGGGTCGGGTCCCCGGCTCAAGGTTTACAATTGTAGCAGCGCTACTCACGGTCCTCACTCGGCCCACAGCCCGTCCGACGAGGCCGCCGGCGCGACACACAGAAGCAGCCATTTCCGAGTCCGAGTCTCCGCACTGAGGGTGACGGGGGCGCGCACGTCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 308857 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 311685 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 325751 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 325751 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 417752 53904295 ~ 53949032 (-) True G19923
TU24926 lncRNA upstream 1736 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 84605 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 126919 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 142220 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 159768 54527784 ~ 54529197 (-) False AMCG00017358
AMCG00017353 mRNA downstream 14205 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017352 mRNA downstream 43331 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017346 mRNA downstream 90445 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017342 mRNA downstream 214936 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017343 mRNA downstream 223609 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017358 mRNA upstream 161007 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017360 mRNA upstream 187341 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017362 mRNA upstream 202255 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017359 mRNA upstream 204409 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017365 mRNA upstream 212054 54580070 ~ 54587525 (-) True AMCG00017365
TU24816 other downstream 212690 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 221568 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 332623 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 409444 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 602408 53762998 ~ 53764376 (-) True G19824
TU25029 other upstream 277821 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 332554 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 332554 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 332554 54700570 ~ 54723791 (-) False G20193
TU25136 other upstream 469081 54837097 ~ 54838491 (-) True G20237

Expression Profile