RNA id: TU24926


Basic Information

Item Value
RNA id TU24926
length 867
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G20066
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54369752 ~ 54370666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgagcacagagagagagagagagagagagagagagagagagagagagagagagacagtagcGGGTCACTCACGTCGATCCTGGCGTCCCACTCGGCCAGGGGGATGTGGCGGCCATAGCTCAGGATCTGCCGTCCGATGTCGTCACATACCGGGGTCGTGCCTGTGGACAGGAAAGCGTGTGCGTCACTGTGCGTGTGCGTCACTGTGCGTGTGCGTCACTGTGCGTGTGCGTgtgcgagaGAGTGTTACCGTCCAGCTGTGCCAGCAGGCTGGTCTTCAGCAGGTTCTTGGCTCGAGCCACATCGCTCTCTGTCACTGTGGTACACAGCAtcatcctgagagagagagagagagagagagagagagtgtcagtgtaGTGCTGCTGTAGTACAGCGGGTCACAGCATAGTGCTGTAGTTTGTAGATCTGGTACAGCTAGGGTTCTGACCACTGGGCCTGAGCGAAGTGCAGCATGTCCTCGATGTGGTGCTTGTCGGTGACGAAGTGAATCCCGAACAGCGCGGTGTCGGAGTAGCAGGTGTTGAAGGACTGGAAGCTGTGGCACAGGCCGTGCTGCACCGCCAGCTGGGACAGGCGGCTGCTCAGGTTCTGAGGGAGACAGAGCGGTCAGAGGAGAGGGAGCGACGTGCAGGGCCCCAGACAGGAGACGGACCCTTGACCCTACATCCAGGACCCCCACTCTGACCCCCGACACCAGCTCACCTTGTCGCCCCCGTAGGTGACGTCATAGTTGCCGATCAGCGTGCGGGCAATCATGAGGGGCACGATGTCGGGGCTTTCCCAGCCGGCCCCCTCCACCGCAATCGCCACGTGGGCCAGAGGCATCGCATCATCCCGCACTCGCAC

Function

GO: NA

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko05012 Parkinson disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 311825 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 314653 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 328719 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 328719 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 420720 53904295 ~ 53949032 (-) True G19923
TU24938 lncRNA upstream 81955 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 124269 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 139570 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 157118 54527784 ~ 54529197 (-) False AMCG00017358
TU25000 lncRNA upstream 208599 54579265 ~ 54579718 (-) True G20122
AMCG00017353 mRNA downstream 17173 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017352 mRNA downstream 46299 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017346 mRNA downstream 93413 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017342 mRNA downstream 217904 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017343 mRNA downstream 226577 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017358 mRNA upstream 158357 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017360 mRNA upstream 184691 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017362 mRNA upstream 199605 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017359 mRNA upstream 201759 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017365 mRNA upstream 209404 54580070 ~ 54587525 (-) True AMCG00017365
TU24923 other downstream 1736 54366784 ~ 54368016 (-) True G20064
TU24816 other downstream 215658 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 224536 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 335591 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 412412 53953294 ~ 53957340 (-) False AMCG00017334
TU25029 other upstream 275171 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 329904 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 329904 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 329904 54700570 ~ 54723791 (-) False G20193
TU25136 other upstream 466431 54837097 ~ 54838491 (-) True G20237

Expression Profile