RNA id: TU24950



Basic Information


Item Value
RNA id TU24950
length 970
RNA type TUCP
GC content 0.47
exon number 2
gene id G20085
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54573474 ~ 54582399 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGATAAAGTCCTCTccttattgaattattaatacaatcaaCCACAGAATTAATGAGTAGATAAATAGTTTGTGGAATGAGCACAGGAGACGGGGGCTGTCAGTGCGGCACAGGAAGTCAGTGCGCAGTGAGGCGAGTCTTGTGACACTCACACCAGGAAGAGAGGAGTTTATATCGAGTCAAAGTGCAGCAGCGAGGGCAATAAACACTCCCACAGGCGCTGAATGCAATGCTCATGTGTATAAATCTGTACAGGCATAAACGGTTCTCtatatgcatgcatacatacatacatacatataaagaCACATTCAGACTGGTGTAGTATTCCCTGCTTTGCAGCTATTGCTTCACATTAGTCTTGTAAGGCAAAGTGGCTGAGATCACTCCTCAGCctcaaaaactaaacaaaattacaaaaaaaaagtatcagattaaaaacaattaatctggaaaggcctgtctgtctgttcattCACggctgtctgtctctgcagatTGTTCTGTCATCAGTACATCAGTCTGTCTGTAAGTGCGTGTCTGTCTGCTACTCTGTCAGTAGACCTCTGCTCGTCTATCCGTTTGGAAGTtagtttgtctgtctgtccatgtTCAGTGGATGTTTCTCTGTAGatcagtctctccctctctctgttcacTTGCAAGCCCGTCTGTCCATCCGTGTGTTGCTGGCTCCTCCGTCCCACAGTGAAGAGCTCCTCACATACGGATGGAGACAGAGACAAAAGACTCACCCTCTCGAAGTAGAAGAGGTATTTCTTCAGCGCCTCCCTGGCCTGGGCCTGCTGGCTCTGGTTGACGATGTCAGGGTTCTCCTTGTAGCGGCTGCATTCGTAATACTCACTGCCGTGGGTCTTCCAGTCACCCAGACACATCCAGCAGAAAtctgaggaggagagaggggacagGAGAGTCACACCTTGTGTTGAACCTCCCTGCATTGGGCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24951 lncRNA upstream 18149 54552140 ~ 54555325 (+) True G20086
TU24878 lncRNA upstream 129471 54442538 ~ 54444003 (+) False AMCG00017357
TU24837 lncRNA upstream 180883 54316979 ~ 54392591 (+) True G20013
TU24855 lncRNA upstream 227697 54343402 ~ 54345777 (+) True G20028
TU24827 lncRNA upstream 402051 54171215 ~ 54171423 (+) True G20006
TU25014 lncRNA downstream 32842 54615241 ~ 54615448 (+) True G20136
TU25057 lncRNA downstream 150621 54733020 ~ 54737869 (+) True G20177
TU25112 lncRNA downstream 213097 54795496 ~ 54797145 (+) True G20218
TU25126 lncRNA downstream 260577 54842976 ~ 54844239 (+) False AMCG00017369
AMCG00017361 mRNA upstream 78215 54493577 ~ 54495259 (+) True AMCG00017361
AMCG00017355 mRNA upstream 104339 54461909 ~ 54469135 (+) True AMCG00017355
AMCG00017357 mRNA upstream 121420 54423553 ~ 54452054 (+) True AMCG00017357
AMCG00017356 mRNA upstream 150842 54389332 ~ 54422632 (+) True AMCG00017356
AMCG00017348 mRNA upstream 201351 54366736 ~ 54372123 (+) True AMCG00017348
AMCG00017363 mRNA downstream 48239 54630638 ~ 54632572 (+) True AMCG00017363
AMCG00017364 mRNA downstream 84481 54666880 ~ 54673342 (+) True AMCG00017364
AMCG00017383 mRNA downstream 106524 54688923 ~ 54690827 (+) True AMCG00017383
AMCG00017381 mRNA downstream 226067 54808466 ~ 54808810 (+) False AMCG00017381
AMCG00017370 mRNA downstream 238737 54821136 ~ 54826385 (+) True AMCG00017370
TU24970 other upstream 44270 54527752 ~ 54529204 (+) True G20099
TU24839 other upstream 255261 54307795 ~ 54318213 (+) False G20013
TU24774 other upstream 507287 54064358 ~ 54066187 (+) True G19961
TU24769 other upstream 518299 54054800 ~ 54055175 (+) True G19956
TU24688 other upstream 625856 53939537 ~ 53947618 (+) True G19896
TU25035 other downstream 80912 54663311 ~ 54664526 (+) True G20156
TU25114 other downstream 226087 54808486 ~ 54809106 (+) True AMCG00017381

Expression Profile