RNA id: TU24951


Basic Information

Item Value
RNA id TU24951
length 2149
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G20086
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54552140 ~ 54555325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcccatctctTTAGAACAACTCATTCAGGAGTCTTGGAGAAATAAGCAAGAGACTGTTGcaggttttgtttgtctttctgtatcagtccaaaaataaaactgaaaaataattataacaataatataataataataatacaggtgTAAAGTATATTATAATCAACCCTAGAACACAAATGAACTGCAGGAATCACCAGCACACTCAACCGGGAACAGCAGGGAATTCATCTCATCGGCAGGTTTCACCCCCCCagcaaacactttttttttttttttcattaaatctagtttttgttttttgtttttttttgcatttttatatcaaagtttgtttctattttcaaacattgttttattttctttcaaaaaaaaattaaaactttttttgttgttgctttttgtattttttctgttggtTTCAATACAATATTTCTTCAGAGCAGGACGCTGAACCGCGCCTATGTGTAGGCGGGCCGTTAGCGAGTCTGTCCGTCTCTGGGCTGTGGCTCCCTCAGACCTTGccctctctcctgtctgtcaccccccacccccccgccgtACACTGAGACCGTTTAACGTCTGCTAAAGAGAAGGGGTGCGTATATAGTGCATGTTCTCAGCACCCCCAGAAGTGGGACTGTCACCCCTTCTGACCTGACATCTAACCCCTGACCTCTGACTGAGAAGCAGCAGCATCGACTGCCCATCGGTTCCATAACCACAGCGCCACTGCCaggacagactgactgactggacacccGTCcagacaggacagacagacacagacggACGCTCGCTTCCCCGACCCAGCCTGTCCCAGCGTGTGGCGTCGCCTGGCTGCAGGGTGCACTCAGCGGGAGTGTGGGAATTGGGAGGTGTCGGTCAAGACTGGGAGCTcacgtgtgtgcgtgcgtgcgtgcgtatgcatgcgtgtgtgtgtgcgtgcaccGTGAACAGGGGAGTGTATTGAACACGCACGCTTGGGACTGTCCCCCAGTTGATTTTCCATTCAAGCCGAGCCTCTCTCGCTGTGTGTGCTTGCAAAAGACTAAATACTGTGTTGTTTTGCACATGGGCATATATACACTTACACACGCTCACACAGGGCCCCCTGACATCATAAAGTGAGCCCCCCCCAACCACTAACAGCGCTGGTGTGCATCTCTGCCACAGTGCCTCTGGGCATCGATAGGAGCCGTCACCGGGCTTCACCACTGTGTTGGGGAGTGCTCCACTTTATGCCCAGTGTTTTACTTGCAGCTgttccccccccaacacacacacacacacacacaatccagcAGCGTTTATGAATCTTATGAAGTCCAGGGGTCTCCAATACAGTACAGTGGGgtctcccccctcctcccaaattcatacatacagaaaacagagagagagagggagagagagagacggttTGAAGTACAGAATGGAAAGGATTACAGAAAGAGGTAGAATGTGTGGAGACAAGGAGAGAATAGCTGACAGAGtgagaactgagagagagagagagagagagagagagagagtgtgtgagtgtgtgtgtgtgtgtaaggaaGTCGGAGAGCAAGCAtgaatgtgtctgtctgtcatctTATTGGTCTTTTggcgattgtgtgtgtgtccgttgATGTCAGTCTATCAGGGTGTCTGTGTCCAAGAGTAGACACGGGTGGAGCTGTGCACAGGGTACCTCGGTGTGCACGTGTGTATCAGTGTCAGAGCATTAACTTGAGTTTGAGTTGGTGCTTCAGTGAGAGcgtgtttgtttgcatgtccGTGTGAGTGCgagagtcagtgtgtgagtgtgccatcagtctcagtgtgtgtccgtctgtgcgggtgtcagtgtgtgagtcagtgcGCGAGTCAGGGAGTGCGTGCGTCAGTgagtgcgtgcgtgcgtgcgtgcgtgcgtgcgNNNNTGAGTGCGTGTCAGtgagtgcgtcagtgtgtgagcgtgtgtcagagtgtgtgagcgtgtgtgtgagtgcgtgcgCGTCAGGCAGAGTGTCAAGTAAGGCACAGGGTCAGTCCCTCAGATCCATGCTGGAGCCGAACAGGGCCACCAGCTGCTCCTCATAGTGTGCGATGTTCCTCTGCATGATTTCCTTACAGGAGCCCAGCAACCTCTCGAACGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24878 lncRNA upstream 108137 54442538 ~ 54444003 (+) False AMCG00017357
TU24837 lncRNA upstream 159549 54316979 ~ 54392591 (+) True G20013
TU24855 lncRNA upstream 206363 54343402 ~ 54345777 (+) True G20028
TU24827 lncRNA upstream 380717 54171215 ~ 54171423 (+) True G20006
TU24771 lncRNA upstream 494220 54056860 ~ 54057920 (+) True G19958
TU24949 lncRNA downstream 23756 54579081 ~ 54582399 (+) False G20085
TU25014 lncRNA downstream 59916 54615241 ~ 54615448 (+) True G20136
TU25057 lncRNA downstream 177695 54733020 ~ 54737869 (+) True G20177
TU25112 lncRNA downstream 240171 54795496 ~ 54797145 (+) True G20218
TU25126 lncRNA downstream 287651 54842976 ~ 54844239 (+) False AMCG00017369
AMCG00017361 mRNA upstream 56881 54493577 ~ 54495259 (+) True AMCG00017361
AMCG00017355 mRNA upstream 83005 54461909 ~ 54469135 (+) True AMCG00017355
AMCG00017357 mRNA upstream 100086 54423553 ~ 54452054 (+) True AMCG00017357
AMCG00017356 mRNA upstream 129508 54389332 ~ 54422632 (+) True AMCG00017356
AMCG00017348 mRNA upstream 180017 54366736 ~ 54372123 (+) True AMCG00017348
AMCG00017363 mRNA downstream 75313 54630638 ~ 54632572 (+) True AMCG00017363
AMCG00017364 mRNA downstream 111555 54666880 ~ 54673342 (+) True AMCG00017364
AMCG00017383 mRNA downstream 133598 54688923 ~ 54690827 (+) True AMCG00017383
AMCG00017381 mRNA downstream 253141 54808466 ~ 54808810 (+) False AMCG00017381
AMCG00017370 mRNA downstream 265811 54821136 ~ 54826385 (+) True AMCG00017370
TU24970 other upstream 22936 54527752 ~ 54529204 (+) True G20099
TU24839 other upstream 233927 54307795 ~ 54318213 (+) False G20013
TU24774 other upstream 485953 54064358 ~ 54066187 (+) True G19961
TU24769 other upstream 496965 54054800 ~ 54055175 (+) True G19956
TU24688 other upstream 604522 53939537 ~ 53947618 (+) True G19896
TU24950 other downstream 18149 54573474 ~ 54582399 (+) True G20085
TU25035 other downstream 107986 54663311 ~ 54664526 (+) True G20156
TU25114 other downstream 253161 54808486 ~ 54809106 (+) True AMCG00017381

Expression Profile