RNA id: TU24970


Basic Information

Item Value
RNA id TU24970
length 1453
RNA type TUCP
GC content 0.52
exon number 1
gene id G20099
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54527752 ~ 54529204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccaaacagaaaaaaattgtCTTTTATTGTCTCAGACATACGACTTTACACACAGGAATATAAGATAGAGAGGTATCTGAAATTGTCAAATattaacaattataaatattattataacattaataataatatggaatgTAGTTTCTTCTGTTTGTCTTCCATtatctgtcctttttttttcatttttagtattttttttttaaagaaatatttcaaataaataaatttctATATAGTCTCTGTCAATATCTTTTTAAATTCTTATATTTCTCTCTCGTCGCACAGACAGTTGGGCAGGGTCTCCATGTCCGTCCTCACTCCTCCTCCGGTGAGTGTGCTGCCCCCCCacgcagggagggagagaggagagagacggTGGGTGGAGAGAGCAGGGCACTAGCGGACTGCAGGCACTGtcctcctctctgtccctctttccTCCCCGTCTCTTCTTCGATGTTCAGGATAAAGTGTCTCTTCCTCCTGCAGACacagcccctctccctctccccgccCTCTCCTGGGGAcgggggagtgagagagggaggctcacagagagagagagcacagaaGGGAGGGAGTCACACAACACGCATAAGTCCCAGTTGTGTCCCAGTCACAGACGACTGACAGGCAGACTGTCCCGCCCGGCCCAGGGGACTCCCTTGAAGACCCCAGCTGAAGTCTCCGCACGGTCCCATGACCTGCAGAGCTCGCGGAGGCCTGTTTTTTGGGGTAGGGGAGGCTTGGAGGGGCACATTAGGTCTGCCTCTGTGTAGCCTGAGTGTTTAGCTTTCAGTTCAGTTCGTGGGTTtctcttgtttaaaaaacaaaacaaaaacaaacgcaAGGCTtttgtaaagagagagagagggagagagaaggtgGTAAGGATTAAGAGCTGAGCagttcaaaaaaagaaaatagagagAAGGCAAGGCTCTGCTCTCCCTTCTGTCCTCTCGGTCTCTCCTTTACACGCATGCACTCACGCAcatacacaacaacaaaaaacgctACACAGTTGCTCGTGGGCAGAAACCCCACCTCAGACAGGCGTGCCGTGGCCCCTACACACGGCACCACCCTCTCCCTTCACCCTCGTTTATCGATTCAGCCCTCGTCCCCTGGTGTCCCTCCCTCGGGAGTTTCTGGTCCGTCTCCTCAGTCTGATCAGATTCAGTTTCTCTTTCCAAGGACAGAAAGGGGGGATGGTGGGGAGAGGAGAGTGGCGTGTGGGGGCGGCGCCAGGGCGCGGCTGTGTCCCCCCCCTAGTCCCCGCTGTCGTCCTCCAGCTCCTTGACGATGGCGATGAGGTTCTGCAGGCCGAAGATGTAGCCGCTGTCCTGGCCCTCGTGCACCACGCTGGCGTCCCCGTAGTGTCTGCAGGTGGTGTGAGCGAAGTCGATCATGCGCACGTCCACCAGGGGGCAGCCCTCGCCCGCCCCTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24878 lncRNA upstream 83749 54442538 ~ 54444003 (+) False AMCG00017357
TU24837 lncRNA upstream 135161 54316979 ~ 54392591 (+) True G20013
TU24855 lncRNA upstream 181975 54343402 ~ 54345777 (+) True G20028
TU24827 lncRNA upstream 356329 54171215 ~ 54171423 (+) True G20006
TU24771 lncRNA upstream 469832 54056860 ~ 54057920 (+) True G19958
TU24951 lncRNA downstream 22936 54552140 ~ 54555325 (+) True G20086
TU24949 lncRNA downstream 49877 54579081 ~ 54582399 (+) False G20085
TU25014 lncRNA downstream 86037 54615241 ~ 54615448 (+) True G20136
TU25057 lncRNA downstream 203816 54733020 ~ 54737869 (+) True G20177
TU25112 lncRNA downstream 266292 54795496 ~ 54797145 (+) True G20218
AMCG00017361 mRNA upstream 32493 54493577 ~ 54495259 (+) True AMCG00017361
AMCG00017355 mRNA upstream 58617 54461909 ~ 54469135 (+) True AMCG00017355
AMCG00017357 mRNA upstream 75698 54423553 ~ 54452054 (+) True AMCG00017357
AMCG00017356 mRNA upstream 105120 54389332 ~ 54422632 (+) True AMCG00017356
AMCG00017348 mRNA upstream 155629 54366736 ~ 54372123 (+) True AMCG00017348
AMCG00017363 mRNA downstream 101434 54630638 ~ 54632572 (+) True AMCG00017363
AMCG00017364 mRNA downstream 137676 54666880 ~ 54673342 (+) True AMCG00017364
AMCG00017383 mRNA downstream 159719 54688923 ~ 54690827 (+) True AMCG00017383
AMCG00017381 mRNA downstream 279262 54808466 ~ 54808810 (+) False AMCG00017381
AMCG00017370 mRNA downstream 291932 54821136 ~ 54826385 (+) True AMCG00017370
TU24839 other upstream 209539 54307795 ~ 54318213 (+) False G20013
TU24774 other upstream 461565 54064358 ~ 54066187 (+) True G19961
TU24769 other upstream 472577 54054800 ~ 54055175 (+) True G19956
TU24688 other upstream 580134 53939537 ~ 53947618 (+) True G19896
TU24638 other upstream 663034 53864108 ~ 53864718 (+) True G19860
TU24950 other downstream 44270 54573474 ~ 54582399 (+) True G20085
TU25035 other downstream 134107 54663311 ~ 54664526 (+) True G20156
TU25114 other downstream 279282 54808486 ~ 54809106 (+) True AMCG00017381

Expression Profile