RNA id: TU25057


Basic Information

Item Value
RNA id TU25057
length 3608
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G20177
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54733020 ~ 54737869 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTAGAGATGTTTAAaaaatttatttttggaaaaggaccagaaaaacaaacaaacaaacatataataataataataataataataataataataataataactctctGCAGACAATGGATCTGTGATGCCGTTGAAGAGTCTGCTCAGTGCTGGGGGGCCTGGGAGGGCTGTACAGTATTTTTGGGGGGGTAAGGTATTTACACCATCATCTGatcaccccccccccgccccccattCGAGAGGAAGCTGTTtgttcctctccctccctggctCTTCCTGCTTTCTCTCAGGACTTCCCTCCACCTGTTGGCTGTTACAGACAGTGCTGCCCCCACGGCCTCCTGCCGCCTTCTTCCGCCTCTTGTTGAGCAGCGGGTTGCTGGACGTGTCCAGGTCTTTGATCTTCACCTGGTCATAGTCGACTCTCATCGTGGCCAGAGCGCTGGTCATCTCCTCCTGcggacacacacagtacacaattatacacaattatacacaatacacaattatacacaataatacacaatacacacacactacagagtGCTGGTCATTTCctcctgcagacacacacaatacacaatacaatatagttctttttcttaaatacatCCTCTTCATGACAGGGATGTATTAATTCTCACCCGTTCCCTCCCCTGCACACAGCCATCTGCTGCCACCCAGTGGATACACAGTGTAACTGCGGGAGGTGAAGCACGTTCACAGGACTGGGCACCGTTCGTgtttgggagagagagactcaccttcACATCGTCCCACATCTCCCTGTCCTCTGTCAGGACACGCGTGGTGTGCAGTGGGGTGGGCGGCACCACCATCGATTGCTGGAATAACAACACAGCGCTGGTCAGACACACTGAGATattgatacactgacacacagtgaCATACTGAGACatactgagagacactgagagactgacacactgagacacagtgagacacactgagacatactgagagacactgagagactgacacactgagacacagtgagacactgagagactgacacactgagacacactgacacactgagagtCACTAACACACTGAGagtcactgagacactgagagacgCTGACACACTGAGGCACACTGGGACACATTGAGACACTCACTGTGATCCAGGGGTGGTTCATGAACTGTGAGATGCTCATCCTCTCATTAGGGTCAGTCTTCAGCAACTGGTGAATCAACAGCttagctggagagagagagagttagttAGGagcaacaatacaaataaacgggcctgctgtgctgtgctttaTTGTGCTGCTTCATGTCTTCTTAAGACATCAACTTAATCTTTCTGGAGTCTGGACTACAGAAGAGACACAcgcactcaaacacacacacagacacactcgcAGCTCCGGTCCAGCACGTACCCTCCTCAGACACTTCGGCCCACTCCGGGGTGGGGAACTCGTACTGGCCCATGCGGATCCGCCGCTTCATCCCAGGAGAGATGGCCTGGCCGGTGTTGGAGTAGAAGGGCGGGAACCCACacagcctggagagagagagcgagagagagagagttacattgttaaatattgttacattgttggttacatctatatatttttgtttttattattatttatcttcttattttctaataatgctttggcaatacaaatgtataactgtcatgccaataaagcaatttgaatttgaatttgagagagagagagagagagagagagagagagggagaggtggcaTGAGAGTGGACTGAACATCGACCTGTGAGacttgttgtgtgtgtgtgtgttgtgtgtccagtgtgcagATCTGTAACACTCACAGGATGTACATGATCACTCCCAGAGACCACATGTCACAGGACTTGTCATACTTCTCTGGGCCGAGCACCTCAGGAGCTgaaacagacatacacacacagacacacaaaacatacgacacacacacacacaaacaccacacagacacagacgcccagaaacacaaatgtataaacaacaAATGAATTCATAGATGttacaaatgtacacatttgtgAATAgcagaaagacacagacagagggacagacagagacgaATCACCAGGAGAgaaacactctctctcacacacacactcacacacacactcacacacacactcacacacacacaacacagacacacacacacactcacacacacacacacacacaacacagacacacacacacacacacacacacacacaaacacacacacacacagacacacacacacacataacacagacacacacacacagacacacacacactcacagacacacacacaacacagacacacacacacacactcacaaacacacacacacacagacacacacactcacacaacacagacacacacagacacaNacacactcacagacacacacacaacacagacacaacacagacacacacacacagacacacacacagacacacacacacacactcacacagacacacagccgcAGACAGTCAGAGTGGCACATGCTGAGTGACACACTGTGACAGACAGATGCTCAGCCAGGCGGACGGACGGACTGCGGTGCTGAGTGTCTCCTGTACTGACCCACGTAGTACGGGGTGTAGCAGGGCGTCTGCAGGGAGTTGTGCAACGTAGTCTCCTTGGCGAAGCCGAAGTCTGTGAGCTTCAGCACCCCGTTGGTCTCCTTACTGGTGTAGAGCAGGTTCTctggctgagagagagagaccgctTTACAAAACACTTGGGTgaactaaatacaaaaacatggaaTCAGAGTCAAAAACAAACTCACATAAAACTTTACacaaaaaagagaaggaaattaGAAACCTTTCTGAGTGAAGAGGAGCGGCAGGAAATATAATCTCCTGATATTGTGGCCCTATAAGCGCTTTAAACAGCAGCTCCACACTGGTGTTTACTTAGTGTGTCTTGTTTCGTAAATGTGGCATTGTGGCCGCAGTCTCtcacacagctgtgtgtgtctcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacagaagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcactcagttattaatggacaccaaacgagcaggatggggcgaatgggctcctctcgactggacacttccttatgttcttatgtcctgTCCTGCGCTCCACAGGTAAACACAGAGTCTCTGACACCCAGTTGAAGGCCGTTAAAAGCGCTGTTCTCAGCGGAGGCTGCATCTGGTGCAATATACTCTGGAGTCTGGAGTTATCTTAAAGACACAATCTTGTCTGCAGGAGACTTGAAGTTCCTGAAGTCGGTcggtctgtctgcctgtctgtccgtctgtctgtctgtcccctgCTCCTCACCTTGACGTCCCTGTGTGCGATGTTCATCTGGTGCAGGAAATCAATGGCCGTCCCGATGTCCCTCATGATCTCTGACGCCTCTGAGGAAACAAAGCAGCACTGtcgcactgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25014 lncRNA upstream 117572 54615241 ~ 54615448 (+) True G20136
TU24949 lncRNA upstream 150621 54579081 ~ 54582399 (+) False G20085
TU24951 lncRNA upstream 177695 54552140 ~ 54555325 (+) True G20086
TU24878 lncRNA upstream 289017 54442538 ~ 54444003 (+) False AMCG00017357
TU24837 lncRNA upstream 340429 54316979 ~ 54392591 (+) True G20013
TU25112 lncRNA downstream 57627 54795496 ~ 54797145 (+) True G20218
TU25126 lncRNA downstream 105107 54842976 ~ 54844239 (+) False AMCG00017369
AMCG00017383 mRNA upstream 42193 54688923 ~ 54690827 (+) True AMCG00017383
AMCG00017364 mRNA upstream 59678 54666880 ~ 54673342 (+) True AMCG00017364
AMCG00017363 mRNA upstream 100448 54630638 ~ 54632572 (+) True AMCG00017363
AMCG00017361 mRNA upstream 237761 54493577 ~ 54495259 (+) True AMCG00017361
AMCG00017355 mRNA upstream 263885 54461909 ~ 54469135 (+) True AMCG00017355
AMCG00017381 mRNA downstream 70597 54808466 ~ 54808810 (+) False AMCG00017381
AMCG00017370 mRNA downstream 83267 54821136 ~ 54826385 (+) True AMCG00017370
AMCG00017382 mRNA downstream 98868 54836737 ~ 54837616 (+) True AMCG00017382
AMCG00017369 mRNA downstream 105071 54842940 ~ 54846281 (+) True AMCG00017369
AMCG00017371 mRNA downstream 118957 54856826 ~ 54863910 (+) True AMCG00017371
TU25035 other upstream 68494 54663311 ~ 54664526 (+) True G20156
TU24950 other upstream 150621 54573474 ~ 54582399 (+) True G20085
TU24970 other upstream 203816 54527752 ~ 54529204 (+) True G20099
TU24839 other upstream 414807 54307795 ~ 54318213 (+) False G20013
TU24774 other upstream 666833 54064358 ~ 54066187 (+) True G19961
TU25114 other downstream 70617 54808486 ~ 54809106 (+) True AMCG00017381

Expression Profile