RNA id: TU25084


Basic Information

Item Value
RNA id TU25084
length 1069
RNA type TUCP
GC content 0.60
exon number 7
gene id G20193
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54700570 ~ 54723791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGAGTGACCGCTGCCCAAGTGAGTGACCTAATTGAGTGAGTGGGCCATCATTGACAGTCACAGTGAGAGGTGTCACTCAGGGTAGAGAGGGGGGCGGAgtttgtcagtctgtctgtatgtcagtgtgtcagagagagagctgcCACAGTTGGGCTGTGGTACAGTTTCTAAACACTGGGAGGCCCCATAGCAGTTACCGATGTATGGATCAAGTCCAGTCTGGTCCTCTCAGTTGTTCTGCCTGAGGTTTCTGGTCTTTGAGGGGCCACAGACATCCAGTGCAGCACAGTACAGGTTGctccagctgtgtgtgtttcagccCTGGTGCTCGCTGGCTTGCTGAGGAGCTGTGTCGTGGTGCTGTGTCGTGGTGCTGTGGAGCTGTGTCGTGGTGCTGTGTCGTGGTGCTGTGTGCAGCCCGGCAGGCGGAGAGGGAAGTGTGTGCGGGTGTGCGCTCAGCCCGCTCCCCCCGGCGCTGGAGAGCAGCAGCGAGATCACAGCCGCTCACAGCCGCTCAGTCCGCCTGGCTGCTCCGCTCGGCTCTCCGGCACGATGAGGGGATCGAGCCGCTGCAAGCACACGCAGCAGCCGGACAGGACAGtgtGCATGACCAACTGCCCCACGCTGATCGTCACGGTGGGTCTGCCGGCCAGGGGGAAGACGTACATCTCCAAGAAGCTGACGCGCTACCTCAACTGGATCGGAGTTCCCACCAAAGagTTCAACGTGGGTCAGTACCGGCGGGAGTGTGTGAAGATCTACAAGTCTTTCGAGTTCTTCCGTCCGGACAACGAGGAGGGCCTGAAGATCAGGAAGCAGTGCGCCTCCGCGGCTCTGAACGATGTGCGCCAGTACCTCAGCGAGGAGGGCGGGCAGGTGGCGGTCTTCGATGCCACCAACACGACCAGGGAGCGCCGGGGCACCATCGTGAAATTTGCCGAACAGAACGGTTacaaggtgagagagagagcgagagagagagaagaggtggagatggagggagggacagagggagatcTTAGCCCTGTATTGATGAGCTGCTGCTGTCTGACCACAGGTGTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25015 lncRNA downstream 85120 54615246 ~ 54615450 (-) True G20137
TU25009 lncRNA downstream 92956 54607363 ~ 54607614 (-) True G20131
TU25000 lncRNA downstream 120852 54579265 ~ 54579718 (-) True G20122
TU24982 lncRNA downstream 171373 54527784 ~ 54529197 (-) False AMCG00017358
TU24996 lncRNA downstream 190082 54510236 ~ 54510488 (-) True G20118
AMCG00017367 mRNA downstream 38659 54654835 ~ 54661911 (-) True AMCG00017367
AMCG00017366 mRNA downstream 52636 54638423 ~ 54647934 (-) True AMCG00017366
AMCG00017368 mRNA downstream 105213 54589059 ~ 54595357 (-) True AMCG00017368
AMCG00017365 mRNA downstream 113045 54580070 ~ 54587525 (-) True AMCG00017365
AMCG00017359 mRNA downstream 122477 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017375 mRNA upstream 1814 54725605 ~ 54729120 (-) True AMCG00017375
AMCG00017374 mRNA upstream 9283 54733074 ~ 54748372 (-) True AMCG00017374
AMCG00017373 mRNA upstream 26692 54750483 ~ 54789078 (-) True AMCG00017373
AMCG00017378 mRNA upstream 68045 54791836 ~ 54794782 (-) True AMCG00017378
AMCG00017377 mRNA upstream 73220 54797011 ~ 54805363 (-) True AMCG00017377
TU25029 other downstream 48706 54645837 ~ 54651864 (-) False AMCG00017366
TU24923 other downstream 332554 54366784 ~ 54368016 (-) True G20064
TU24816 other downstream 546476 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 555354 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 666409 54032639 ~ 54034161 (-) True G19950
TU25136 other upstream 113306 54837097 ~ 54838491 (-) True G20237

Expression Profile