RNA id: TU25136


Basic Information

Item Value
RNA id TU25136
length 1367
RNA type TUCP
GC content 0.55
exon number 2
gene id G20237
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54837097 ~ 54838491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcatgccaataaagctccgTCAATctccacacacgcacacaccgagtcacacagacacatcgagtcacagacacacgcacacacacacaccaagtcAGGACCAGGAAATCATGGATAAAATCATAAATGAGTACGTTAATAAACAGCAAgacttgttttttatatatagaagcAATTTTTActaaaaaatatagatatttatttcttacataTGTACAAGCAAGCGTTTTTGAATTATAAAATGAGACCATGTGACCACagcttctggaaaaaaaaaatcttgtttacAAAGACACTGGGCACTGAGGATAGAAACACTGTGTCCAGCACTGACCGGCCCAGAGCCACACGCacgagtctgtgtgtgtgagtgagtgtgtgtataagCTTTATAATAGAGTGTCTGTGCGAGTGTGTATCTGTTATTGAGTGTCAATGAgtaattgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgttcagtgtgactgtttttcagttgttcaGTGCATGAGAGTGAATGTGTGCTTGTAGCCgtgtgtattattgtgtgtaGTGCTGGTCTCAGTGTGcgtgttattgtgtgttttgcGTCTGGGCCTGGTTGTGGTCTTGTGTGTCCTCTGTTCCGGGGACACACCCCACTCTGCTTTGGAGCAGAAAAAAAGCCCACCCCCTTTTCGGAAACATCGGATCCGATTGGCTGCCCCAGGTAGTGGTGGTGTGGGAGTTGTTTACAGTTATACTGATTGGCCAGAGAGGGCTTCTGGGAATGTCCTTTGTTGCACCTTGTTTCACTTCCTATTCTGCCGCATGccccctctcctcctcatcctctccTCGCTCTCAGAGGAGGAAGGGGTAGTCCTGCAAGTACTGCTGCAGCCGGTGGGGGAGGGGCAGCTGCAGAGGCTCGGCGGTCAGCCGGTTGATGGCGAGCCGCGTCAAGTGCTGCAGCGAGGGGAAGGTGTCCCGGCGGTGCAGCGGCCGCACCAGCTTCAGCAGCACAGCCGAGTCCCGGCACTGCGCCGCGGCATGGGAAGAGGGCGGGCTGGGCGGCCTGGGCACCGGGAGGGGGAGCCGCCGGTCCTTCCCCTCCGCCTCCTCCCCGGCCCGGCTGGAGCCCACGTAGTGCTGCACCAGGCTGGGCACGTTGGCGAAGGCCAGGATGCGTGGCTTGGCCAGGCAGCTCGAGTCCAGGCGGAAGCGCCCGTGGCTGTACTCGATGCGCACATTGGTCGGACCGCGCAGCGTCTTCACCGACAGTGTCAGCATGTACAGCGAGTGGCTGCTGTCCCTCACCAGGAAGGTGCCCTCCTGCGCCCGCTGCAGCTCCGCCCGTGCCTCGCTGGCCGTGATCGCGCCC

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25015 lncRNA downstream 221647 54615246 ~ 54615450 (-) True G20137
TU25009 lncRNA downstream 229483 54607363 ~ 54607614 (-) True G20131
TU25000 lncRNA downstream 257379 54579265 ~ 54579718 (-) True G20122
TU24982 lncRNA downstream 307900 54527784 ~ 54529197 (-) False AMCG00017358
TU24996 lncRNA downstream 326609 54510236 ~ 54510488 (-) True G20118
AMCG00017372 mRNA downstream 16922 54813893 ~ 54820175 (-) True AMCG00017372
AMCG00017377 mRNA downstream 31734 54797011 ~ 54805363 (-) True AMCG00017377
AMCG00017378 mRNA downstream 42315 54791836 ~ 54794782 (-) True AMCG00017378
AMCG00017373 mRNA downstream 48019 54750483 ~ 54789078 (-) True AMCG00017373
AMCG00017374 mRNA downstream 88725 54733074 ~ 54748372 (-) True AMCG00017374
AMCG00017376 mRNA upstream 8403 54846894 ~ 54853690 (-) True AMCG00017376
TU25084 other downstream 113306 54700570 ~ 54723791 (-) True G20193
TU25086 other downstream 113306 54700570 ~ 54723791 (-) False G20193
TU25083 other downstream 132817 54700570 ~ 54704280 (-) False G20193
TU25029 other downstream 185233 54645837 ~ 54651864 (-) False AMCG00017366
TU24923 other downstream 469081 54366784 ~ 54368016 (-) True G20064

Expression Profile