RNA id: TU112076


Basic Information

Item Value
RNA id TU112076
length 321
lncRNA type intronic
GC content 0.47
exon number 4
gene id AMCG00017384
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 160054 ~ 351786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCCAGGGGGTACACCAGGCACACGTGTATGCAGCCATGGATGTTGAAGGGGCCTTATCGTCCTAAATGTTAATGACAGCTACTACCTTGAACCAATCCGAGGGCTGGACTCCATCTATCACATGATTTATAGGACAGAACACCTGCCAATCAAGAAGGGGACATGTGGGTACCACCATTCACACCACAGGGGCATTCTGACTGAGCTTACCAGCCTCATTAAACCTTTGCATCAAAGGGTGAGACGGAATGCCTTTGGTACAACCAAGTATATGGAGCTATTCATAGTAGCTGACAATACACTGttttgttttctgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112007 lncRNA downstream 35836 166138 ~ 171750 (-) True G89803
TU112090 lncRNA upstream 165713 385671 ~ 447085 (-) True G89870
TU112108 lncRNA upstream 243250 463208 ~ 463423 (-) True G89883
TU112110 lncRNA upstream 282209 502167 ~ 528797 (-) True G89885
TU112117 lncRNA upstream 412958 632916 ~ 633178 (-) True G89892
TU112118 lncRNA upstream 471612 691570 ~ 691851 (-) True G89893
AMCG00017387 mRNA upstream 140497 360455 ~ 470430 (-) True AMCG00017387
AMCG00017391 mRNA upstream 715923 935881 ~ 936676 (-) True AMCG00017391
AMCG00017393 mRNA upstream 1055274 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017394 mRNA upstream 1218570 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 1335570 1555528 ~ 1561186 (-) True AMCG00017395
TU112008 other downstream 101701 105685 ~ 105885 (-) True G89804
TU112073 other upstream 25972 245930 ~ 351786 (-) False AMCG00017384
TU112472 other upstream 2388731 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 4322817 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 4938426 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 4938426 5158384 ~ 5221021 (-) True G90501

Expression Profile