RNA id: TU111993


Basic Information

Item Value
RNA id TU111993
length 892
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00017386
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 48007 ~ 98397 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAGCCTTCTCAACAGAGCACAGCTACGAATCAATTAGTGgcacaattctctctctctctcgcgcactcactctctcgttctctctctctctctctctctctctctgggtgcaCCCGAGATAGTGAGAGAGATGTGGGGGGTTAAAAAAAGGATCCATAAGTGATGATGTAATGTGCAAACGGGGCGGTGGTTGGAGAATCACAGCAGAGACTcgggcagagagaaagagagcgagaagGGTTGTTTCCTTGTGAGAGCAGGTGCAGGGCTGAGGCCTGCAGAAAGGCTTGAGAAAATGGCACTGCACTAATTAGTGTTAGAACGCAGCTGATTTTGTCGGAAAGGAAGAGGGATCCGTGAAGCAGCCTAAGTGGACAGACAATACATTCACAAAGGACAGGAAGGCAGAAATCCCCACTCAGCCCTCCCCAAAAAAGGACCCATGAAGCCATTTgcaagcatttttctttttttctttctttcatcagCATCGAGCTGTGATACAGTACTTTACATAGCAGAagctgtataatttattttttctcctctttatttattgttctttttggCTCCTTCATCTCCCTGAATGTGATTGTAACTGAAGGTCTTTCTCTGTTTATTCCTCCGTGTCTTTTCTTGAAAAATGATGAGACAGACCCCAGCTCTCAGGAAGACCACCACCCGGCGCACCAAGCCAACACGGCCCTCCAGCAATGCGGCTTCCAATGGCACACCTGGCCCCTCAGGCTCAGCCTCGGCCTCGGGGGGTGAGATGAGCAGCAGCGAGCCCAGCACACCTGCTCAGACACCCCTGGCAGCGCCCGTCATCCCCACGCCCAGCGGCTCCCTAACCTCTCCGGGTGCTCCTCCTGCACCCATTACCAGCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111984 lncRNA upstream 50055 42802 ~ 43065 (+) True G89784
TU112023 lncRNA downstream 76667 175050 ~ 176503 (+) True G89818
TU112024 lncRNA downstream 78863 177246 ~ 179935 (+) True G89819
TU112039 lncRNA downstream 128868 227251 ~ 228724 (+) True G89832
TU112047 lncRNA downstream 244232 342615 ~ 402466 (+) True G89837
TU112121 lncRNA downstream 647371 745754 ~ 745999 (+) True G89896
AMCG00017385 mRNA downstream 11292 109675 ~ 171747 (+) True AMCG00017385
AMCG00017388 mRNA downstream 111014 209397 ~ 210954 (+) False AMCG00017388
AMCG00017389 mRNA downstream 323126 421509 ~ 440294 (+) True AMCG00017389
AMCG00017390 mRNA downstream 756895 855278 ~ 887994 (+) True AMCG00017390
AMCG00017392 mRNA downstream 1167059 1265442 ~ 1267334 (+) True AMCG00017392
TU112033 other downstream 109203 207586 ~ 211936 (+) True AMCG00017388
TU112484 other downstream 2589037 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 2589037 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 4564276 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 6631355 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile