RNA id: AMCG00017387


Basic Information

Item Value
RNA id AMCG00017387
length 8409
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00017387
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 360455 ~ 470430 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCGGGCAGGGTCGCAGCCTGTAACTTCTGTGCACCGTGGAGGGGCAGGCCTGCCGGGGCCTGGTCAACTCCAGCTTTACCATCTCCCTGCTACAACCCGGTACCATCACCATCCCGGAAGCAACGTGGAAAGCCACCTCCTTTGCTTCCTTGGCAACAGCTCCATGGATCAAATAGAGACCCAGTGCGCAAGCGGCAATCAGTTACTGAGTGTCAACATGGAGCCACGGGCAGAAATTGACAACAGGACGATTGTCACAACACCTCCTGCTTCTCGGCTCATCCAGGTCGAGGAGTTGAGGAGCCAGAGCAGCAGCCCTGGTAGTGGGACACACCTGTCCAGCACCAGTGGAGTATCTCTGGGGGAGGCCATTGTGCAGAGGGCCAAGCAGGGTATGGAGTCATGGTACCAGTTGCCAGCAGAGGAGGATGTGAGCAAGCTGACAGAAACTTCTGTGAGCAGGGTGGGTCTGGCCCCATTGTCTGCTAAGGAGCATGCAGCTTGTGACTTCCCCTCCATACAGGAAGAGGTCACCATGACTGGGGATACAAGACTGCACCAGACCGAAGGATGGTCCCATGCTTCCCCACTGGAATTTCAAGATAGCCGTCTCTCACCTGCTCTTCCTTTGCTGCCTGTGCATTCTTCAAAAACTCAAAACATGGGTGATGATACCTTCTATCAACAGACAGAAGTGGAATTTGCCCCCCTCAGGGAATCTCCAGATGTTTCTGTCATGTCTGCAAGGATCACAAGACCCCTCCAGATTAGTGATGCTGTGCAGCTTGTGATCACCGAAGTCTCTGTGGAAATTCCCAGTGACCATCCCTCATTGTCCCAGCATCCACTGGCAATCACGACAGCTACTGCTGAGGATGCCAGCAGCAACTGCTCTTTATCTCAACATACTCTGTCACATATGTCTTTGGATGAAGGTATAAGCAATTTTGTCAAGATCTCAGAGGAGGAGATGGAAGGGTACCAACTTTCAGGACTTAAAGAATCCCAGTTTGAAGCTTGTGTACAGACTCGGGGGGATTCTGCTGGGGAACAACATGCCTCTTCTGTTCCTGATTACCAAGAGAACCTGTTCAAACAATTGCTTGAGGATGAAGCCTCATTTTTAAGCACTGATTGTCCTAATCCTCTGTTACATGAGCTCCTAGAAAAAGATGTTGGGTTAGCAATTAGTGGTGCATTTCCATATGCCTCTGGAAGTTCTACAAAAAGGACTTTATCTGGCAATGAATCCCAAAAAGATAAAGCAGTGAACAAGGACCAAGATGTAACTTTGTCTGAGAATCCTGAGAATCCTAGAAACCCAGCAGAGCAATTGGAAGCATTGGTAGTACCACAGCTTGATCTTTCTAGAAGCTCTTCAGATCAGGAGTCTTTAAGAGGGTCAAGAAATTTCCCCCCTGGAGGAATTTCACTTTTGTCTCCAAAACTCATAGAAAGTGCTACAGACAAAGCATTGAGGCAATCTGAACTGTGCAATATTACCACCAGGTCTTGTCGTACCCAGTCAGATGATGAGTTGACAGAAGCTCTCCGTAAGCAGCTGTGTTCTGAGATCTTGTCAAGTCGCCATTTGAAGTCTGGTTCCAGAAAAGCACAGAAAGAAAGTGATCCTACACTGCAAAGCAACCAGCAAGGCACCCCAAACACTGGCTCGCTGGGAACCTACAGTGGAAAAGACAGCACCATTATTGAAGTGCCCACTGGGATTAGGAAGAATGAAATTACATCATCATCAGGATTTAGTTTTGAACGAGGACATAAGGAAAGAGAAATGTCATCTATGGAGAATCGTACAGCTGTGGATGGGTCTCTTTTAGGATGTATTGCTCAGCCAGTTTCTCAGTCAACCCCAGGCTTGTTTTCAGAGGTACTTCGTGCCACTGTTCAACCACCGTATAGGAAGCTGACTCCAATTGAGTTTAACCCTGAAGCTACTTTACCCACAGAAGATGTACCCCACAGCAGATCCTCTAAACTTCTTgcttctgcaattaacacagaTCTAACAGAAGCATCTAGTCCAATGACCTATAAGGACAGTTTAAATGCCTGTTTGAAGAAAACAAGGAAGATTCAGTCCTTACCCACTCTGAATTATATGGAGAAAGTAGGAGCCTGGAATGTGACCCAGTATACAGGTCAAACTTTTTTTGACAACTTGGCTCTGAAAGGCTTCACTGGGGTTTCTCCCAAGAAGAAAGCTTTTAATGCCATTGCTGActcattaaataatatttttaccCAGCAAAGAAGTGAAAAATCTCCAACACCCTCTGCCTTCATTGTGAGCAATCACAGCCCCAGAAGGACTCTAGCTGCTTCGTTTTCTGGGACCTCTTCTCCAGCTAACGATGCTTGTGGCCCCACTGGAGGTTTAAAATCCTCTCCCATAGGCAGGTCCATGTCTTATACTTCATTAAGTACCGCAAGCAAAGAAATTCAGCAAGCTGGAGCTTCTCAAAGTGAGAAAAAAGAAGCTTTTCAGGCTGAGGTTGTCCATGGAATGGGGTGTGCTTCAGCAACAACAGGAGCTAACAGGTCCTTAGACCAAGACTCATCCTCACAGATCCATAAAGCTTCTGGGAACTCTCCACATCCTAATGATAGGAAGAGCATTCCTAATAGCAGTAACATTCAACCTCAACCAACAACTGTTTTATTGGAGAAGTGTTCCCCACTTGATGAAGAGAAAAGTCCTGAGGAGGGAAGGAAACCAGGAAACCAGGAATTGCAGAGTTCAGCCCAGCCCCCATCTCTAATCAGCCTAGATCGTTTCAGTGATTTGTCTCCAAACCATAATTTCAGCAGCACCCTTGCAAGTTCTCAGGACACAAGTTGTTATGGGGATAGAAGGCGCTTAGCTTCAGCAAGAGCAGTTTCAGCCTCTTCCATTGTTAGCTTGGAAGTTGACAACTATGCTCCGTATTGGGTCACCAATCCTTCAACACCAGCGAAgaataaagatttaaatattGAGGAGAGAATTCcgGTGTACCTTCATAATCTTGGAATTGACCAGTCGCCATCAACCATACTAAATCCTTTTCTAGCAAGCGGGCCAATAAGAGAACCAGAATTTTCACCAACTGATCTTCGCACCATTAAAGGTTCAACAGGTACCCCAACAAGAAGCACCCAGCCTTCAGAAGGTGACAGTCTTACTAAGGGAAAATTTTCACTGTCTAGCTTATTGTCTGTGAATTCTAGTCTCAGCATGTCCATTTCGGTGAGCTCTAATGCTGACCACAACATTTCTTTGTGCAAAGAGCTGTCTGTGCAGAATGTGGCTGGATCTTCTTCAGACAGACCTGTCAGTCAGTGCAGTCTCCAGGCTGCTTTCCATCCACTGGACCGGTCATTGGATCTTCCAGTGCAGCTGACTTATGATGACCGCACAGATTGTATCAGTGCTGAAACTTTCTCACTTCCAGAGGACCGGAATCAACCTTTGAACGAAAGCAGTTTGTCACGTGTTGCAAAACATATCCGTAAGTTTCAGTCCTGTGAACTCTCTGTCACTCCAGTCAGTCTTTCCTCCACTTCTTTAGCTGACGACGAGCACCACACCAAGACCCATGAAGCAGATAATGAGGAGTTTGCAAAGGTGACTGATGCTACACCTACTCGCAGCCTGGAACTAGGGAATGACTCTTTTGTCGGGTCCAAAACCCTACAGGAGATCCGAAAACTTTTGGGCAAGGCAGACAGCCTTGTGTCCGGAAGATCCTCTTTTTCCTCCCCTTTTGCATCCTTGAGGGGATCTGTCAACTTGGCCTCGTTTCTTCACAACAAGTCAGACAGTTTCCAGGactatttttcttcttctacagAAAACCAGCAGAGCCTGTTGTCGCTGCTTTGGAAAAGGTCATCTTCTGATTCTATGCTCACATTGGATGGACTGAGAGATGACTCCTTTCAAGGGGAAATCCAACCATCCAAGACGCCAGTCACCAGATCAGCCATCATGACAGACCATGACCGATTCTCCATAGACAGGAATTCTGTTGGCAACGCTTCGAAGCAGATCACTCAAGAGAGCACACGCTCATCTTTCCCTGATAAGAACGTCGGGCGGTCTGAGCCAGAAGGCTGCAGTGAGGGTACTCAGGATAAAGTGACCCCTGTGCTTTTTCCTACAGTGTCTTCCACAGAGGAAAGTCAAGAAGAAAGACAAGGGCATATTGATCTCATACAAGATGTTACTTCACCAAAGCCTAAGGGGAGTGCTGTCATTGGTTCAGTGAAAGAGAGTCAAACATCTGATGGCAAGGAAGGGGAAAAGGCCATGGCCAGTGACAACAGCAGTGTGGATTCCCTGGCAGCTCGAGTTGCCTGTGTCCTTAAAAATGAATCCCCGGCGACAGTGGCCTCCAGTGTCATAAGTGAGGGGGACCAAGAGGAATGCAAAGCACAAGACTGGATTAAATTGAAGGTGGCTGGCCAGCATCATGAGCCCCTGGAACTGAATGTAGAAGATCGTCAGAGGATTGAGGAGATTAAAGCAGAACTCTTGCTTAACACTACTGGAAGAAAGGGCCAGTGGAGTACAGATACTGATTCAGATGCCACCTCCAGTTTAGGTCTGCCTGAGGTGCAGCCTTCAGGGAAACCAGCAGAAGAATTATTTGCTCTTCACACTGCAAAGCACCAGATCTCCAGTCAGATGCAGAAACTGACCAGCAATCCGTTTGACACCAGTGTGGAGCTCCACACTCCTCTGCGGAAAGATATGGACGCACGCATCCGAGAAAGAGAGGAGCATCCCAGACCTAGTGCCACTCAGCAGCTGGCATATGAAGTCAGGAAACCTATTGCCTCCATCACATTTTCCTCCCGCAAGCGTTCCCCTTCTCCCTCTGCATGCCCCACTGGGCTGCTCACCCCTGCTTCAGAGTTCTTTTGCCACACAGACCTCATCCAGCAGGAGAATCAACAGCCTCCATCTATGGGGCCTACAGAGCTAGACCAAAGACAAGCAGACAGCCTCCCTGCTATGACAATAACTCTCCCTGAGAGTCAAGAGCATGCTAATATACAAAAGGTAGTTTTTTCCCATCAGATCCCTGTTGCCGAGACTGCTCCTAGGGGTTATTCAGACTCCCATGTCCAGGACATATTCAGTGAAGCTGAGAGGGATGCTTTAACAAACAGACATTTTGTTccaacaataaaatcaatatctAAAAGCTATGAGCAGCTAAGAAGAAATAATTTAACTGGACAAGATGAATATGATTCTGTATCTGATTTAGGACCAATAAAGGACATTCTTGCCAGCAATTCTGCAACAGGGTATGGTTTCTGTCACCCTCAGCTAGGACCAGATGCACATGAAGAGCTGAAGCTTAAACTTAGTGCAGCATGCAGTAAACGGACAGAAAAAGAGCAACAAGGAATTTCTGTCACCACTGATGACACCCTCCCTGCTATTCTTCCAGATGTTAGAGACCATAGCCCTGGAAGGAATTTTCAAATGGATGCAGCTAAAAAGAGACAGGCTTCCAGATCTGCTTCTAACCTGACCCTAGAGGGCAATGCTTCAGCCAGTCTAGAGAACAGTGCTGCACTTCTGCAGATTTCATCTTTTGCCTCTGGCATACCTTCAGTTTCGTCTCCCACCAAAAAGGTATTATCATACGTCCATGTGACTTTATCGCCCAAAGACCCTGATGGGAAATCCAAGTCAATTGAAGAGAAAGAGTTTCAGTTTGATTCTTCTCTGCCAAGAAATGAGGACGGTGGTGCTGAGATGTACCAAGGGAGAACTGGCACTCTTCCTGCTTTTCCGAGGCTGGATCCTTCTGGGAACCCTTCAGAGGAGAAAGCACAGTTTCCATTTCAAGGACATTTGTCCCCAGATGCTGCGGTTTCAGAGGAAGCTAGTAATGTCAGAGAGCGAAGAGCAGCAGACATTTCAAAGCCTTTACTGGAGCAAGGGGGTTCTTGTGAAGATCCTCCTATGCTGTTGCCATATAAACCACATGGGAGCCCTGAGATATTTTACATGCCTAACACTGGGGGTCAGGTTTCCACTATTCTCTCAGACACCACCATGGAAAGCTCACATACAGGGTCAGATGATGCTGTCCCACCGAAATTCACTGTAGAGATCGTGGGCTCCAAAAACAAAGAAGTGGACATTGATGAGGGGATCTACATCAAGAGAACTCAACCTAGGACTGTATGGAAGGAAAACAAAGGAAGAGCTCAAAAAGAAGAGGCCCATCAGACTCACCCAAGACCCTCCCCTGAATACCCAGTCCCTATGGAGGGAAGGGATCATGGTCATCTTAACAGGGAATCAGCAGCTAAGAGCAGCTGTATATCCTTCAGTGGAACCACCTCAAAACACTCAGAACACCGGAGAGGAGAGCGAGAGTTCAGCAGGGAAAACCTagctttcagaaaaaaacaagaaagtgatgAGTTTGCCTCTCTGAAAGGTGAAGTTGAATACAGCATAGAGGATCTACATGTTCATTGCAGCTTGGTTGGAGAACATCCAACATCATCCACAGCAGCAAGGAGCATGACCACAAGGGAGAACTCTTCTTATGGATCCCCTGCTCAACTGGGTTATGAAAGAACCTTGGACCCTGGTTTCCAGGTGTCTACGAATGATTCCTTGCAAGGAAGTAGGACTTTGGATGAGCTATGGGAAAAGTTCAAAGAGAAACGGAGTTGTTCAGAACCCCAGAATTACAGTGGGAGTGCTCTTCCCCTTTTGGAGAGGCTTGATCGTCTTTCCAGGCTCCTGCACAACTCTAGTCATCATTCATTCACTCCTGGGAGACAAAATGAACAGAGTGGGTCCAGAGTCCATGGGTTGCAGAGCAGTAAAAATGATGAAGTGAAGGGCAGGCTAAGAGAAAACGGAGACAGACACTTCCGGGAAGCATTGCGAGAAATGTCTGCAGACCCAGAAGAGATGCTAACATCCATCCTGACTAAGCACAGTATCACTCTTTCTTCTTCAAGCCAAGAGCCTGGCAGAGGGATGGCTTCCTTTAGCCACCACCTTTACCCTGCAGAAAGAGAACAGGAGGATTCGGTACCAAGTGAGGCAGTGTCTGAGGTGGACACAGCCATTCAAAAGGATTCCACAGATAACAGTCACATCGAGACTGGCAGCACCATATCCACCATTGACACAGCTCGACTTGTCAGAGCCTTTGGGCATCGGAGAGTCACTGTCAAACCAGGCCTAAGAAAACTGTACCACACTATTGATAAGCAGAAGGGAAACTTGGAGATGAAGAGAACATCAAAGCAGAGAGAAAGCCAGAGGCAAAAATATAGATCGGCAGAAAGTCCGTTATTGTGTAGAACAGAGTCCACGAGGACCCTTGATTCTGTTTCGTCCACAAGTACCTATTCCCTCCCTGCACAGCAAGGCCAATCAAATACTCTCAAGAAGAAGGCAGTTAAATTGGTCAGTAAAGGGATACAGGCAGGGGATCTAGAGATTGTGAACAGTGGAACCAAGAGGCACACAAGGGATGTGGGGATGACCTTCCCCTCTCCAGGGTTTTCCCGGGGAGTGCAGACGGCAGCCTCCAGGATGGGAACAAAAAGAGATGAGCACAACGAATCAGCATTACAGTCATTCTTTAATGAGAACAAGACAAGGAAGAGCAATCTGCAACAACACCCTCGGGGTTTGAGTTGGTTTGTTCCTGTTGACGACCTAAAATCTAATGCAAAGAAAGAGAACCAGCCTGGCTCCAGGTCAGGTCCTGGCCCAGTCTGGTTTGAACCCTACACTAAAAACAAACCCTGGAGGGAGCCACTCCGAGAGAAGCACGTGCAGGAACAGCCAGTGAGCATCAGAGGGAGGAGCATGGtccagccaatcacagctcCTGAAACAAATGGCAAGCCGCCAACTTCCCTCATCCATAGAACTCTTCAGGAAGCTCTTCAGATGCGCCACCCAGAATTCGTTTCTCGTTCCAGAGAAAGATTGAAGAGATTAGAGCTGCTggcagaggagaggaggatgcaGGCTGTGTTTGACAGTGAGAGAGAAGACCTGTTTAATCGTCCGGGAACTAAGAAAACCTGGAGAGCCAGTCATCCTGACAGGCTGCATGGTGAAGaaAATCTtctacagaagaaaaaagacattCCAAAGAAAGAGATGTTCATGAGGTCCAAACTGAAGTACACTCAGCTGCCTGAAGTGCTGCTGCGccgagaggaggagaggaggaaggcGGAGTATCGCTCCTACAGACTCAAAGCAGAACTTTTCCAGAGGAAAGTCACCAGCCGTATTTTGGGTAGAAAAACATTGTGGCAGTGAATCAACAGACCATGAAAAGTGAAAACCATGAATTCCACAGAGTGCAGTAATTAATTGTATGAAAGCAGGATTCAG

Function

GO: NA

KEGG:

id description
K16741 ALMS1; alstrom syndrome protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112076 lncRNA downstream 140497 207586 ~ 219958 (-) False AMCG00017384
TU112074 lncRNA downstream 141905 207586 ~ 218550 (-) False AMCG00017384
TU112007 lncRNA downstream 188705 166138 ~ 171750 (-) True G89803
TU112110 lncRNA upstream 31737 502167 ~ 528797 (-) True G89885
TU112117 lncRNA upstream 162486 632916 ~ 633178 (-) True G89892
TU112118 lncRNA upstream 221140 691570 ~ 691851 (-) True G89893
TU112120 lncRNA upstream 250871 721301 ~ 721711 (-) True G89895
TU112125 lncRNA upstream 440966 911396 ~ 911648 (-) True G89900
AMCG00017384 mRNA downstream 83631 160054 ~ 276824 (-) True AMCG00017384
AMCG00017391 mRNA upstream 465451 935881 ~ 936676 (-) True AMCG00017391
AMCG00017393 mRNA upstream 804802 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017394 mRNA upstream 968098 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 1085098 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017396 mRNA upstream 1129158 1599588 ~ 1600290 (-) True AMCG00017396
TU112073 other downstream 8669 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 254570 105685 ~ 105885 (-) True G89804
TU112472 other upstream 2138259 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 4072345 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 4687954 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 4687954 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 4752043 5222473 ~ 5223047 (-) True G90502

Expression Profile