RNA id: AMCG00017388


Basic Information

Item Value
RNA id AMCG00017388
length 405
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00017388
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 207586 ~ 211936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCCCTTGAGGGAATGTGCAGTAATGAGAACTCGGGAGGCATCAATGTGGACCACTCAGATTTGTCCATTGGGGCCGCAGCTACGATGGCCCACGAGATCGGGCACAACTTTGGCATGAGTCATGACAACGAGGGCTGCTGTGTGGAGGCCACACCAGAGCAGGGCGGCTGTGTAATGGCAGCTGCCACTGGGCACCCTTTCCCTCGTGTGTTCAGTGGCTGCAGTAAAAGTGACCTGGACAGCTACTTCAGGAAGGGAGGAGGAATGTGTCTCTTCAACATGCCTGATATGAAGGACCTGGTTGGGGGAAAGAGGTGTGGGAATGGCTTTGTAGAGGCCGGGGAGGAGTGTGACTGTGGGGATCCAGAGGTGAGATCAGTAGTGTTTCTCCTTGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112024 lncRNA upstream 29462 177246 ~ 179935 (+) True G89819
TU112023 lncRNA upstream 32894 175050 ~ 176503 (+) True G89818
TU111984 lncRNA upstream 166332 42802 ~ 43065 (+) True G89784
TU112039 lncRNA downstream 16297 227251 ~ 228724 (+) True G89832
TU112047 lncRNA downstream 131661 342615 ~ 402466 (+) True G89837
TU112121 lncRNA downstream 534800 745754 ~ 745999 (+) True G89896
TU112123 lncRNA downstream 666957 877911 ~ 878653 (+) True G89898
TU112126 lncRNA downstream 704049 915003 ~ 915213 (+) True G89901
AMCG00017385 mRNA upstream 37650 109675 ~ 171747 (+) True AMCG00017385
AMCG00017386 mRNA upstream 111000 57720 ~ 98397 (+) False AMCG00017386
AMCG00017389 mRNA downstream 210555 421509 ~ 440294 (+) True AMCG00017389
AMCG00017390 mRNA downstream 644324 855278 ~ 887994 (+) True AMCG00017390
AMCG00017392 mRNA downstream 1054488 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017399 mRNA downstream 1523478 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017398 mRNA downstream 1547432 1758386 ~ 1768848 (+) True AMCG00017398
TU111991 other upstream 111014 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 2476466 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 2476466 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 4451705 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 6518784 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 6518784 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile