RNA id: TU112033


Basic Information

Item Value
RNA id TU112033
length 746
RNA type TUCP
GC content 0.52
exon number 6
gene id AMCG00017388
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 207586 ~ 211936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtacagaaaacaaaacagtgaccTCCCGAAAATAAAGGAGAGGATAATGGAAATTGCCAATTATGTTGATAAGTTTTACAGGGTCCTGAATATCCGGGTGCCACTAATAGGTCTGGAGGTATGGACTGAGAGGGACCAATGCTTGGTGACAGAGGAGCCAAATGCCACACTCTGGTCTTTCCTGCAATGGAGACAGAAGCTGAAATCACGCAAGAAACATGACAATGCACAGCTGCTCACGGGTGTCATTTTTAAGGGTACAACCATCGGCATGGCTCCCCTTGAGGGAATGTGCAGTAATGAGAACTCGGGAGGCATCAATGTGGACCACTCAGATTTGTCCATTGGGGCCGCAGCTACGATGGCCCACGAGATCGGGCACAACTTTGGCATGAGTCATGACAACGAGGGCTGCTGTGTGGAGGCCACACCAGAGCAGGGCGGCTGTGTAATGGCAGCTGCCACTGGGCACCCTTTCCCTCGTGTGTTCAGTGGCTGCAGTAAAAGTGACCTGGACAGCTACTTCAGGAAGGGAGGAGGAATGTGTCTCTTCAACATGCCTGATATGAAGGACCTGGTTGGGGGAAAGAGGTGTGGGAATGGCTTTGTAGAGGCCGGGGAGGAGTGTGACTGTGGGGATCCAGAGGAATGCACAAACTCCTGTTGTAACGCCAAAAACTGCACTTTGAAGGCTGAAGCCCAGTGTGCCCATGGAGTGTGCTGTGAGGACTGCAAGGTACAATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112024 lncRNA upstream 27651 177246 ~ 179935 (+) True G89819
TU112023 lncRNA upstream 31083 175050 ~ 176503 (+) True G89818
TU111984 lncRNA upstream 164521 42802 ~ 43065 (+) True G89784
TU112039 lncRNA downstream 15315 227251 ~ 228724 (+) True G89832
TU112047 lncRNA downstream 130679 342615 ~ 402466 (+) True G89837
TU112121 lncRNA downstream 533818 745754 ~ 745999 (+) True G89896
TU112123 lncRNA downstream 665975 877911 ~ 878653 (+) True G89898
TU112126 lncRNA downstream 703067 915003 ~ 915213 (+) True G89901
AMCG00017385 mRNA upstream 35839 109675 ~ 171747 (+) True AMCG00017385
AMCG00017386 mRNA upstream 109189 57720 ~ 98397 (+) False AMCG00017386
AMCG00017389 mRNA downstream 209573 421509 ~ 440294 (+) True AMCG00017389
AMCG00017390 mRNA downstream 643342 855278 ~ 887994 (+) True AMCG00017390
AMCG00017392 mRNA downstream 1053506 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017399 mRNA downstream 1522496 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017398 mRNA downstream 1546450 1758386 ~ 1768848 (+) True AMCG00017398
TU111991 other upstream 109203 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 2475484 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 2475484 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 4450723 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 6517802 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 6517802 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile