RNA id: AMCG00017392


Basic Information

Item Value
RNA id AMCG00017392
length 780
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00017392
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1265442 ~ 1267334 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCCACTAAAGACATGAAGGCAGGATCAGTATCCAGCAGCGAGGAGAGGAGGCGAGGTCCTTTGGATCAGCTTCCACCCCCGGCTAACTCCAACAAGCCGCTGACCCCCTTCAGCATAGaggatattttaaacaaaccctCCATAAAGAAGTCCGCAGCCTCTCTCTGCCCTCCGAGGGTCCTAGAGAAAGTGAACGGTTCAACAGCAGCCAGAAACGGCATCACCACCCCGTCCTCTCCGCTGTGCGCTCTGGAGGAATTAGCCAGCAAAACTTTTAAAGGTCTGGAAGTCAGCGTAATACAAGCAGCCGAAGGTCGTGAGCATCTGAACGCATTTGGCCAGAGACAGGCCTCAAAAAAGAGAAGGAAGTCTCGTACCGCTTTCACGAACCATCAGATTTACGAACTAGAAAAGCGCTTTTTATACCAGAAATACTTATCCCCCGCAGACAGAGATCAGATTGCGCAGCAACTTGGTCTTACCAATGCCCAGGTCATCACCTGGTTTCAGAACAGACGAGCGAAACTCAAAAGAGACTTGGAGGAGATGAAAGCAGACGTTGAGTCGCTCAAGAAGATCCCTCCTCAGGCTCTGGAGAAGTTGGTTTCCATGGGAGACATTGATGACCCCCAAGGAAGCTCGGGGGCAATATCACCAAGCATTTCCCCGTCTTCACAAGGGCACGGGGTCTTCCCACAGTCCCCATCTTCATCCAGAGACCAAACAACAGACGAGTTCTCGGAAGAGGACGAAGAAATTGAAGtggatgattaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055001 muscle cell development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112139 lncRNA upstream 153283 1111954 ~ 1112159 (+) True G89913
TU112134 lncRNA upstream 294178 970643 ~ 971264 (+) True G89908
TU112126 lncRNA upstream 350229 915003 ~ 915213 (+) True G89901
TU112123 lncRNA upstream 386789 877911 ~ 878653 (+) True G89898
TU112121 lncRNA upstream 519443 745754 ~ 745999 (+) True G89896
TU112165 lncRNA downstream 73567 1340901 ~ 1341295 (+) True G89938
TU112214 lncRNA downstream 313649 1580983 ~ 1589805 (+) True G89983
TU112288 lncRNA downstream 661808 1929142 ~ 1934784 (+) True G90042
TU112325 lncRNA downstream 735704 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA downstream 736742 2004076 ~ 2004606 (+) False G90070
AMCG00017390 mRNA upstream 377448 855278 ~ 887994 (+) True AMCG00017390
AMCG00017389 mRNA upstream 825148 421509 ~ 440294 (+) True AMCG00017389
AMCG00017388 mRNA upstream 1054488 209397 ~ 210954 (+) False AMCG00017388
AMCG00017385 mRNA upstream 1093695 109675 ~ 171747 (+) True AMCG00017385
AMCG00017386 mRNA upstream 1167045 57720 ~ 98397 (+) False AMCG00017386
AMCG00017399 mRNA downstream 467098 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017398 mRNA downstream 491052 1758386 ~ 1768848 (+) True AMCG00017398
AMCG00017402 mRNA downstream 605293 1872627 ~ 1875428 (+) True AMCG00017402
AMCG00017403 mRNA downstream 609342 1876676 ~ 1894462 (+) True AMCG00017403
AMCG00017411 mRNA downstream 656143 1923477 ~ 1929454 (+) True AMCG00017411
TU112033 other upstream 1053506 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 1167059 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 1420086 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 1420086 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 3395325 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 5462404 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 5462404 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_10469322_10470665.mRNA True 2257 mRNA 0.41 2 CI01000012 10468583 ~ 10471373 (+)