RNA id: AMCG00017393


Basic Information

Item Value
RNA id AMCG00017393
length 1228
RNA type mRNA
GC content 0.36
exon number 8
gene id AMCG00017393
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1275232 ~ 1289433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GaagaagtgaaagtgaaaatcaAAGACCTAAATGAGCACATTGTTTGTTACCTTTGTGCTGGGTACTTCATTGATGCTACAACAATCACCGAATGTTTACATACATTCTGTAAGAGCTGTATTGTGAAGTATCTTCAGACCAGCAAATACTGTCCAATGTGTAACATAAAAATCCATGAAACGCAGCCATTACTAAATTTGAAGTTGGACAGGGTGATGCAAGATATTGTCTACAAGCTGGTACCAGGATTACAAGAGAGTGAAGATAAAAGGATTAGAGAATTCTATCAGTCACGTGGTTTAGAACGTGTTATTCAGCCATCGCATGAAGACTCTGTACCAGATCCAGCAGGATTGCCATACACCAGTTTCGATCACTCAAAAGCCCATTTCTACCGATATGATGAGCAAGTCTCACTTTGTTTAGAAAGACAAAGttcATCAACTGGCAAGGATAAAAACAAGTTCACACTACAGcAAAAGTTTGTCAGGTGTTCTGCAAGAGCAGAGGTGCGGCATCTGAGAAGGGTCCTTTGTCATAGACTTAGTGTTGACAAACATCAGGTTCAGATGTTATTCAACAACGAGTCCTTGCCGGATCACATGACCATGAAGCAACTATGGCTGTCACATTGGTTTGGCAAGTCGCAACCTTTGGTCCTTCATTACACCATCAAAGACAAGCGAGGAAGATAGAACGAGTGCACATTTTGAAAGGATATTCTTGGTTGAACATTTCAATGAATTTCACAGCCTATAAATATCAGGTGTacatactttgtattttatatattctatttttaatgatatttctgtaaatatagatattttgggttttgttttatttttctaaatacattttgtgaatagATAAGAGCTGTTGTCttattaaatctattttgtaatccaaaatatttatatggtatgtttttttttttgtttgtttgttagttttaaaagcaaaataaaatggttcCTTACAAAATGTGATATGTAAACAGTGAGAGGTGGCTATGCATCTGActcattttgtgtaatttgtgcCTGTAATGTCATACCCAAGCAAGACAACTTCAAATGGCTCCAAGTGGGGAAGGTGTGAGAActgattcttcttcttttgcttAAAATGAAGGTTCACCTGTATAAACTGAGATTAATACTTGCCTTCAGCAATTTacccttttttcttatttgtattgttatgaaAGGAAAGTGTATATGATAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11487 PCGF1, NSPC1; polycomb group RING finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112138 lncRNA downstream 235761 1039272 ~ 1039471 (-) True G89912
TU112135 lncRNA downstream 303804 968543 ~ 971428 (-) True G89909
TU112125 lncRNA downstream 363584 911396 ~ 911648 (-) True G89900
TU112120 lncRNA downstream 553521 721301 ~ 721711 (-) True G89895
TU112118 lncRNA downstream 583381 691570 ~ 691851 (-) True G89893
TU112166 lncRNA upstream 51439 1340872 ~ 1341089 (-) True G89939
TU112167 lncRNA upstream 69251 1358684 ~ 1358981 (-) True G89940
TU112257 lncRNA upstream 538247 1827680 ~ 1831528 (-) True G90017
TU112321 lncRNA upstream 635775 1925208 ~ 1926851 (-) True G90066
TU112352 lncRNA upstream 765406 2054839 ~ 2055363 (-) True G90093
AMCG00017391 mRNA downstream 338556 935881 ~ 936676 (-) True AMCG00017391
AMCG00017387 mRNA downstream 804802 360455 ~ 470430 (-) True AMCG00017387
AMCG00017384 mRNA downstream 998408 160054 ~ 276824 (-) True AMCG00017384
AMCG00017394 mRNA upstream 149095 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 266095 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017396 mRNA upstream 310155 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017397 mRNA upstream 311158 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017400 mRNA upstream 415513 1704946 ~ 1707277 (-) True AMCG00017400
TU112073 other downstream 923446 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1169347 105685 ~ 105885 (-) True G89804
TU112472 other upstream 1319256 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 3253342 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3868951 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3868951 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3933040 5222473 ~ 5223047 (-) True G90502

Expression Profile