RNA id: AMCG00017395


Basic Information

Item Value
RNA id AMCG00017395
length 483
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00017395
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1555528 ~ 1561186 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTGTATTCATTCCTCTCCCTGGCAGCTGCCCTATCACCGTTCTCAGTGACTCGGAGGATTGGTCATCCCTATCAAAATCGGACGCCCCCTAAGAGGAAAAAGCCCAGGACATCTTTCAGCCGGGTGCAGATCTGTGAACTCGAGAAGCGCTTCCACCGGCAGAAGTACCTGGCATCTGCGGAACGGGCCACTCTGGCCAAAGCACTGAAGATGACTGATGCACAAGTCAAGACCTGGTTCCAGAACAGGAGGACTAAATGGCGGAGGCAGACCGCAGAGGAGCGCGAAGCCGAAAGGCAGCAGGCAAATCGGCTGATGCTGCAGCTCCAGCAGGAGGCTTTCCAGAAGACCCTGAGTCAGCCCTTGCAGCAGGACCCTCTCTGTCTGCACAACTCCTCCCTGTATGCCCTGCAGAACCTCCAGCCTTGGGCCGATGACAACAAAGTCACCTCAGTCACATCTGTGGCTTCTGTGGTCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112167 lncRNA downstream 196547 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 214439 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 516057 1039272 ~ 1039471 (-) True G89912
TU112135 lncRNA downstream 584100 968543 ~ 971428 (-) True G89909
TU112125 lncRNA downstream 643880 911396 ~ 911648 (-) True G89900
TU112257 lncRNA upstream 266494 1827680 ~ 1831528 (-) True G90017
TU112321 lncRNA upstream 364022 1925208 ~ 1926851 (-) True G90066
TU112352 lncRNA upstream 493653 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 517854 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 624199 2185385 ~ 2185739 (-) True G90129
AMCG00017394 mRNA downstream 107947 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017393 mRNA downstream 266095 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017391 mRNA downstream 618852 935881 ~ 936676 (-) True AMCG00017391
AMCG00017387 mRNA downstream 1085098 360455 ~ 470430 (-) True AMCG00017387
AMCG00017384 mRNA downstream 1278704 160054 ~ 276824 (-) True AMCG00017384
AMCG00017396 mRNA upstream 38402 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017397 mRNA upstream 39405 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017400 mRNA upstream 143760 1704946 ~ 1707277 (-) True AMCG00017400
AMCG00017401 mRNA upstream 210227 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017409 mRNA upstream 375936 1937122 ~ 1946925 (-) True AMCG00017409
TU112073 other downstream 1203742 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1449643 105685 ~ 105885 (-) True G89804
TU112472 other upstream 1047503 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2981589 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3597198 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3597198 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3661287 5222473 ~ 5223047 (-) True G90502

Expression Profile