RNA id: AMCG00017400


Basic Information

Item Value
RNA id AMCG00017400
length 822
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00017400
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1704946 ~ 1707277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATAGCAGGATATTTTTGCTAAGCCTGATAGCTGCAGCATTTGCACACAGCCTTCCCCTGCAAAGGCCGACACACCTGGACTGGAAACAGCTAATTGACAGTGGCAAAGCCTGTAAAGAGTGTCATCCTCAGCAGTGCTTCTTGCCACTGGGATGCCCTGCAGGCAGAGTGAGAGACTGCTGTGGCTGCTGCTGGGAGTGTGGCAACAGCGAGCGACAGCATTGCGACCTCGACCCTTCCAGTAACTTCTATGGAAAGTGTGGAGAGGGCCTGGAGTGCCAGGTCCTGGAAGAGGATGTCAAATCTGGAGACATTCCTGAGCGACACTGTGTCTGCAGCAGCCAAGAGATCATCTGTGGCTCTGATGGCAAAACCTATGAGAATATTTGCCAGTTCAGAGATGCCCACTATCGATCAAGGGAGGCAGGAGACTTGACTGTTGCCCACAATGGGCCTTGCAGAGCAGAACCGTTTATTGCAGTCTCTCCTCATGATGTTCTAAACATGGAAGGAAGTGACATCATCTTCGGCTGTGAAGTTTTCTCTTATCCAATGGCGTTTATTGAGTGGAGGAAAGAAGGAAACAGCATTTTCTTGCCAGCAGATGACTCCCACATTGCTGTGCAGGCTCGTGGTGGACCCCAGTGCTTTGAACTCACAGGCTGGCTCCAGATACAGAATATACAAAAGGAGGATGAAGGGGTGTACACGTGCTTGGCCAAAAATGAGTTTGGAGAGGTGTCTGCCTCTGCAAGATTGCAGGTTGTTGAAAGAGGTATGTCAGATGCTCTTGGAAGGAGGCCATTGTCAACAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112167 lncRNA downstream 345965 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 363857 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 665475 1039272 ~ 1039471 (-) True G89912
TU112135 lncRNA downstream 733518 968543 ~ 971428 (-) True G89909
TU112125 lncRNA downstream 793298 911396 ~ 911648 (-) True G89900
TU112257 lncRNA upstream 120403 1827680 ~ 1831528 (-) True G90017
TU112321 lncRNA upstream 217931 1925208 ~ 1926851 (-) True G90066
TU112352 lncRNA upstream 347562 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 371763 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 478108 2185385 ~ 2185739 (-) True G90129
AMCG00017397 mRNA downstream 103888 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017396 mRNA downstream 104656 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017395 mRNA downstream 143760 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017394 mRNA downstream 257365 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017393 mRNA downstream 415513 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017401 mRNA upstream 64136 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017409 mRNA upstream 229845 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017410 mRNA upstream 240883 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017407 mRNA upstream 278344 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017408 mRNA upstream 298482 2005759 ~ 2015562 (-) True AMCG00017408
TU112073 other downstream 1353160 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1599061 105685 ~ 105885 (-) True G89804
TU112472 other upstream 901412 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2835498 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3451107 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3451107 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3515196 5222473 ~ 5223047 (-) True G90502

Expression Profile