RNA id: AMCG00017403


Basic Information

Item Value
RNA id AMCG00017403
length 3047
RNA type mRNA
GC content 0.38
exon number 12
gene id AMCG00017403
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1876676 ~ 1894462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGGGATGAGAGCTGTTGAGAAAAGTAGCAGGttgttcaaaatataaaaatagcatgCGGGAAATTAGCCTGCCACCACTGGATTCAATTTACAGATATACTAAATAATGGCAATTCCGGGGATAGAAGAGCTGTTTGAATTACAGAGGTTGCCAAACGATGGATTACTTCTGTTACTCTTCCTGTTGTACGTCCCAGTCGGTCTGTGTTTGATGCTGCTCAGAATATTTATTGGTGTTCACGTATTCTTAGTGAGTTGCGCGCTTCCGGATAGCCTCGTCAGAAGatttattgtACGAGTCATGTGTTCAGTTCTGGGAATGTATGTTAAACAGGATAACCCCCGCCAGAGAGACAAGAATGTGAAATTGTATATCTGTAATCATGTGACCCAGTTTGACCATAACATCATCAACCTTCTGACATCCTGCAACACGCCTATGGCAGAAGGGTTGCCTGGCTTTGTGTGCTGGGCACGGGGCTTCATGGAGCTGGGGATGATGTCAGGGAGGTCAGAAATGGCAGAGTCCCTCAGACAGTACTGTTCTACGGAGGGCAACCTACCCCTGCTGCTGTTTCCTGAGGAGGAAACCACTAACGGCCGAGTGGGCCTCCTCAAATTCAGtacCTGGCCTTTCACAGTTTCAGATTCCGTCCAGCCTGTGGCTTTGATTGCAAAGAGGCCATTTATACCACTGAATACAGAAGAGTCCTCCTGGATTACAGAGCTGTTGTGGACCTTCTTTATTCCATTTACAGTGTACCAAGTAAGATGGCTTCCAACTGTATCTAGACAAGATGGTGATTCAAGTCAAGAGTTTGCCAGTAAAGTGCAGGAGCTCTTGGCTATGAAGCTTGGTGTCGTGTCTACACAGATCACTAGAGCTGATAAAATAGAGCACATCAAGAGAAAAAGGCATATTGCACCTCGAACTACAAATTCAACTCACTCAGGTGCAAGACCCAGAACTAATCCTTTGGGCTTCATGGCTTCTAACTCGGGAGTGGAAGATGTTAGGATTGCTGGCATGGCTCAGCAGGTGAAAGAAGTGCTTCCAGATGTCCCACTCAGTGTTATCAAGAGAGATCTAGTGCGGACAAACTGTGTGGACACCACAATCACCAACCTGCTGGAGGGGGCTGACGAGACTCCATCAGATTCCTTGGGGGTGTTTAGCGCTACATCTTCTCGGAGTCAGTTCTCCACTGTCACTGCTCCTGCACCTACTTTGAAACCTACTGCTAAGTCATTTGGAAAATCTCCTTTTGACCGACACATGTCTCTGCAGGAAAGAAAAGAGGCCTTGTATGAATATGCAAGACGACgttatattgaaaaacatggACTAAATcaggaaatggaaaatgaacaCTGATGCTGGGTGTAATCAAGTCAAAAGGAGATTTATTtggaaagacagccattactatTAAAGAATTGTACTGAACTGAAAAGGACCTTGATGTCTGGAAAACTTTAATGTAAACTACAGTAACAAGTGTGTGGGGAAGACGtactttggatttttttttttttttttttttaaatcttttgcaTGGCAATCATGCATgtacctttttaattatttctctttACAAAGAAGATTATTTTGGTAAAAATTTGTATTCAGATCCAGTTATGGTGATGcatcttatattttgtacaacttTAAAGGTGATTTGCAAATCTTAAAAAGCGCAGTCCAGCTTGATTTATTTGAGACTGACATTTCTGTAGGTTCCTTACAATAGTTACTTATGTATTGAACCGATTgaactgcttttaaattaaatccatccATATTAAAGCAAAAAGGTAatctagtttatttttccattgtaatTGAATCCAggtttcaattattttacattttgttaccAACCAGTTACCAGTTACCAATTGCCAGGAGAAAGAGATCTTGAAActaaatgttttggtttgtgtgcCCTATAGAGAATTATGAATGTGATCAGCTTGTAACTGAATTTAGCTGATCTGGTGCAAGTGTATGTCATGGCCTGTACTTTAGAATAGATGTAAatgccaaaatatatattttttaaaagatgtaCCTACATTGAGTAACAGCTTAATGCTGTGCAGTGGTGCATGAGTCAGTTTTTAATCAAGGCTAAGTAATAGATTCAGTAATGACTATTCTTATTGAAAGGACTAGATACTTCTACACTGACAAATCATTAGTGAATTGTTTAAGCCCAATTACACTTTTGTTCAGCAAAGtagaaatgtgatttaatgaACAGTATGTGGGTGCTTGGTGCGCTATCTTCAAAATGAGTCGctttaatatttcttttttccacTTTGAGGAATTTACAGTTTAGTGAAATACCGgtaccttttatttattttgttgttgctttgcaGCTGAGGCACTGGATTTTAAAGCAGATGTGTACTTTCAGTTAAACATCAGTTTTGGATTGTTTTCTTAACTTGTACACACATCTGTTCTACTTTATCCattgtgaaaaaacattttttatctgTACCAAGGAGTTCTACTGGTGTGGAAGAGTTCAATTTTCTATTAAATGGCCTTGAGCACATCTTGAATGAGTGATTTATCAATCTGTTTTTACCATACAAAAGATTTTATGAATCTTAAATTACATCCTAAATCCAaagcatttaattcattttattttaaatttgagtggCTTATTTCACTCATATTCTTTACAAAAGGAAGgttgaaaaatgcattgttttgtattcaaAGATTTGGTTGTTGAATGTTTAACAAAGGCAAAACCGAACTGCACATTCTAGTGCCCTTTaatgaacattaaaataaaaaagaaacgaGAAACATTGGtccatacattttcttttaatctagTTACCTTAATTAGCAGTTACTTTATTTCCAGCACAGATGCATTTTCAATGTCTAAAAGTACAGCTTATCTGGAGAAGTTCTCTGCTGAAGCGTatagtccataaatattttactCCATAAAATTAAGCAGAAACGGCATGGTTTGATCTTGTTACATACCGTTAGGACCATAAATgtttgg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K19716 AUP1; ancient ubiquitous protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112214 lncRNA upstream 286871 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 535381 1340901 ~ 1341295 (+) True G89938
TU112139 lncRNA upstream 764517 1111954 ~ 1112159 (+) True G89913
TU112134 lncRNA upstream 905412 970643 ~ 971264 (+) True G89908
TU112126 lncRNA upstream 961463 915003 ~ 915213 (+) True G89901
TU112288 lncRNA downstream 34680 1929142 ~ 1934784 (+) True G90042
TU112325 lncRNA downstream 108576 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA downstream 109614 2004076 ~ 2004606 (+) False G90070
TU112409 lncRNA downstream 567420 2461882 ~ 2504164 (+) True G90144
TU112419 lncRNA downstream 597445 2491907 ~ 2528801 (+) True G90149
AMCG00017402 mRNA upstream 1248 1872627 ~ 1875428 (+) True AMCG00017402
AMCG00017398 mRNA upstream 107828 1758386 ~ 1768848 (+) True AMCG00017398
AMCG00017399 mRNA upstream 140654 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017392 mRNA upstream 609342 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017390 mRNA upstream 988682 855278 ~ 887994 (+) True AMCG00017390
AMCG00017411 mRNA downstream 29015 1923477 ~ 1929454 (+) True AMCG00017411
AMCG00017404 mRNA downstream 29015 1923477 ~ 1933451 (+) True AMCG00017404
AMCG00017405 mRNA downstream 153215 2047677 ~ 2049406 (+) True AMCG00017405
AMCG00017412 mRNA downstream 213429 2107891 ~ 2129512 (+) True AMCG00017412
AMCG00017413 mRNA downstream 533431 2427893 ~ 2460519 (+) True AMCG00017413
TU112033 other upstream 1664740 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 1778293 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 792958 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 792958 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2768197 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4835276 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4835276 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile