RNA id: AMCG00017404


Basic Information

Item Value
RNA id AMCG00017404
length 474
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00017404
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1923477 ~ 1933451 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCCCCTTCCAACTCTACCACTGGGGCTGTCCTCAGAGGTGCGGCAGGGAGAGTTTGTGGTAGCCATGGGAAGCCCTTTCTCTCTGCGCAACACCATAACTTCAGGGATCGTGAGCTCCGTGCAGAGAGGCAGCAGAGAGCTTGGCCTCTCCAACAGTAACATGGACTACATTCAGACCGACGCAGCCATTGATGTAGGTAGTAATTTGGGCATCATTTCGGAGCTGAAAGTACGTGACCCTATCTTCCAAGATGTGACCCATGGAGTCCTGATTCACAAGATAATCATGGGTTCCCCAGCCAACAGGGCTGGGATGAAACCTGGTGATATAGTTGTGGAGATCAATGGGAAAACGGTGAAGACTGCAGAAGACATCTACAACACGGTGCTAACTTCAGACAGCATTAACATGGTTGTAAAACGAGGGCCTGATCTGCTCATGCTGCACATGACTCCTGAGTTTGTAGAGTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112214 lncRNA upstream 333672 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 582182 1340901 ~ 1341295 (+) True G89938
TU112139 lncRNA upstream 811318 1111954 ~ 1112159 (+) True G89913
TU112134 lncRNA upstream 952213 970643 ~ 971264 (+) True G89908
TU112126 lncRNA upstream 1008264 915003 ~ 915213 (+) True G89901
TU112325 lncRNA downstream 69587 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA downstream 70625 2004076 ~ 2004606 (+) False G90070
TU112409 lncRNA downstream 528431 2461882 ~ 2504164 (+) True G90144
TU112419 lncRNA downstream 558456 2491907 ~ 2528801 (+) True G90149
TU112532 lncRNA downstream 1303994 3237445 ~ 3237726 (+) True G90248
AMCG00017403 mRNA upstream 29015 1876676 ~ 1894462 (+) True AMCG00017403
AMCG00017402 mRNA upstream 48049 1872627 ~ 1875428 (+) True AMCG00017402
AMCG00017398 mRNA upstream 154629 1758386 ~ 1768848 (+) True AMCG00017398
AMCG00017399 mRNA upstream 187455 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017392 mRNA upstream 656143 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017405 mRNA downstream 114226 2047677 ~ 2049406 (+) True AMCG00017405
AMCG00017412 mRNA downstream 174440 2107891 ~ 2129512 (+) True AMCG00017412
AMCG00017413 mRNA downstream 494442 2427893 ~ 2460519 (+) True AMCG00017413
AMCG00017415 mRNA downstream 640038 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017416 mRNA downstream 712823 2646274 ~ 2649483 (+) True AMCG00017416
TU112033 other upstream 1711541 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 1825094 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 753969 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 753969 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2729208 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4796287 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4796287 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile