RNA id: AMCG00017406


Basic Information

Item Value
RNA id AMCG00017406
length 1431
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00017406
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2023432 ~ 2032216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacatatgCAAGTGATCAACTGTATAAAGGTTACCTGCGGCGCAATATGGCACATTTTGTGACCATAGTCAAAGTGATGGATATCTTGCCACATCTTCACTGCCTCACAGATTCGGACAGGGATGAAATTGTGGCTAAAAGAGAAAGCACAGGCAATTATAATGCCATGCAGTTGCTACTGGATTGCCTCAGGCGAAGAGAAGACTGGCCATCGATTTTCATTAGAGCTCTTGAAGAGACTGAACAGAGAAATCTTGCATCAGAGCTCAGGAGAGAATATGAGTCTCTTCTAGTCCAGCACACTGCCCTCCCTGCTGAAGCTGCTTCCCATGAGAATACTCCCCCTAAAGACATAGCTGCTGCATCTGTCCCCCCACCAAATCTGGCACCAGCCCCTCAACCAGACCGACCTTCTGCCCCCTCTCAGTCTCTCCCACCTCAGCCACATAGTTCTGGGGCTGAGGCCCACACATCCCTCCCAGCAAACCTCTCCCAGGCACTTACACAGCACTCGCTGCTGGATCAGTCGGAAGCGAAGTCCCCTGTTCAGGAAACTGACTCTCCTGACGGCAAAGTGGTGAGCACTCCTGTGAAGCCAGCTGAAGTCAGTCAGgctGGGATAAACAAGCAGCATACAAGCCCACCTCAGGAGAGCCCAACTCAGCAGACATCCAGAACCAGTAGAGGCACAGCTGCCCTAGATCACCACAATGCCTTTCCTATCCCATCAAGCAGTGGGGGCCACTCCAATGCTAAAGATGAGTTTCCCAGTAAGCCTGGAATGCTTTATTCATTTGTTGATGTACACGTCCATCAGGCTGCAAATAGCCGAGTGGACATTTCTACAGTCCGTGAAGAGCATCCCTATTCTGGTGATTCCAATCGTCTGCAGTTTAGTGGTTGCTCTTCTGATAGCATTCAGGCTCCTGCAGGCCCAGAGGTTGCATCTGTTCCAGAGCATTCTAGAAATGAGCCTGAGGAAAACCACTATGCTTCCTACAACTCCTCTGTTCCCTGTCCTTGTCAGAGTGTCCTAAGCAATAATTCCTTCATTCCCGAAAGGAAGCCAACAGAAGATATGGCTAACAGAATGTCCCAGGATAGTGGACCAACTGTCAACAATGATGCtgaggactctctctctctctcagatgtgAGAGAGTCTGCAATGCATTTCTACCAACCTCCCCCAGTTGATAACTATGCTGTGCAAACCTCTAGCACCATAAACAAGAGGTCTCCTGAGACACCTAGAGAACACTCCAGTTCTCAAGACCTAGGGATAGAAAACTCTTCTTCTAGGCCACACAATGAGAGCCCCTGGATAGCTGGTGCCATTAATAATGTTGATAATAACTACAGTCAAGTGATCGTGTCGGCTGCCGTGTTTGTTTGTGCGGTGCTGCTGTGGAGATACATGAAAATGTAG

Function

GO: NA

KEGG:

id description
K12648 MAVS, IPS1; mitochondrial antiviral-signaling protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112321 lncRNA downstream 96581 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 191904 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 664451 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 682343 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 983961 1039272 ~ 1039471 (-) True G89912
TU112352 lncRNA upstream 22623 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 46824 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 153169 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 253009 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 340894 2373110 ~ 2464259 (-) True G90157
AMCG00017408 mRNA downstream 7870 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 29891 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 58868 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 76507 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017401 mRNA downstream 242224 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017414 mRNA upstream 43962 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017417 mRNA upstream 496699 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 569567 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 679086 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 809706 2841922 ~ 3087650 (-) True AMCG00017425
TU112073 other downstream 1671646 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1917547 105685 ~ 105885 (-) True G89804
TU112472 other upstream 576473 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2510559 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3126168 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3126168 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3190257 5222473 ~ 5223047 (-) True G90502

Expression Profile