RNA id: AMCG00017408


Basic Information

Item Value
RNA id AMCG00017408
length 1317
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00017408
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2005759 ~ 2015562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTTGAACGGTTATCACTGTGAAGATAAAGCAGCCGCAGAAAcggaggaggaagagagtgtAGGGGAGAAGCAGCAGTGGGCGCAAAGAAAGGAGTCAGCCGCTCCAAGAGCTGGGGACACCACGGAGAAAGAAGCTGATGCGCCCAGAGCAAGTGCGTCGAGGGAGCGCCTACCGTCGAACTCTATGCCCAGGCAAAGGACCGACTCCCTGAAAAAGAACAGGCCGCCCTTCCCCTGGTTTGGGATGGACATCGGAGGGACCCTGGTCAAGCTGGTATATTTTGAACCAAAGGACATCACTGTAGAGGAGGAGCAAGAGGAAGTGGAAAGCCTGAAGAGCATCCGCAGATACCTGACGTCTAACGTGGCCTATGGGTCCACAGGCTTACGGGATGTCCACCTGGAGCTCAAAGACCTCACCCTGTGCGGGCGGAAGGGTAACCTGCATTTCATACGCTTCCCCACTCACGACATGCCTGCCTTCCTCCAGATGGGCAGAGACAAGCACTTCTCCAGTTTGCACACCATGCTCTGCGCCACAGGAGGGGGGGCTTATAAATTCGACCGTGATTTCTATACAATGGCTGATCTTCGGCTGCGTAAGTTGGATGAACTGGACTGCCTTATAAAAGGAGTGTTGTACATAGAATCAGTCAGGTTTAATGGACACTCGGAGTGCTACTATTTTGAAAACCCCACTGATCCTGATCTGTGCCAACAAAAGCCTTACAAGCTGGAGAACCCTTATCCCCTGTTGCTGGTTAACATTGGCTCTGGTGTGAGCATTCTAGCTGTTTATTCCAAAGACAATTACAAACGGGTAACTGGGACCAGTCTTGGAGGGGGGAGCTTTCTTGGATTATGCTGCTTGCTGACAGGCTGTTCAACATTTGAGGAAGCCCTGGAGATGGCCTCGTGTGGGGACAGCACCAGGGTGGATAAACTAGTGCGAGATATCTATGGAGGGGACTACGATAAATTTGGTCTCCCTGGCTGGGCAGTGGCTTCGAGttttgGGAACATGATGTGCAAGGAAAAACGGGAATCCATTTCAAAAGAAGACCTGGCCAGAGCAACACTGGTCACCATCACCAATAATATTGGTTCAATAACAAGAATGTGTGCATTGAATGAGAATATCCAAAGAGTGGTATTTGTTGGCAACTTCTTAAGGATTAATACACTTTCAATGAAGCTTCTGGCATATGCTATGGACTATTGGTCAAAAGGACAACTAAAAGCACTTTTTCTGAAACATGAGGGCTATTTTGGAGCAGTTGGTGCCTTGCTGGAGCTGTTGAACCAATCataa

Function

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112321 lncRNA downstream 78908 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 174231 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 646778 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 664670 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 966288 1039272 ~ 1039471 (-) True G89912
TU112352 lncRNA upstream 39277 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 63478 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 169823 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 269663 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 357548 2373110 ~ 2464259 (-) True G90157
AMCG00017407 mRNA downstream 12218 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 41195 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 58834 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017401 mRNA downstream 224551 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017400 mRNA downstream 298482 1704946 ~ 1707277 (-) True AMCG00017400
AMCG00017406 mRNA upstream 7870 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017414 mRNA upstream 60616 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017417 mRNA upstream 513353 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 586221 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 695740 2711302 ~ 2841894 (-) False AMCG00017426
TU112073 other downstream 1653973 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1899874 105685 ~ 105885 (-) True G89804
TU112472 other upstream 593127 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2527213 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3142822 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3142822 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3206911 5222473 ~ 5223047 (-) True G90502

Expression Profile