RNA id: AMCG00017410


Basic Information

Item Value
RNA id AMCG00017410
length 501
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00017410
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1948160 ~ 1964564 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGGCTGTATACTGCGAGGCAGCAGAACCACTACCTGCTTCGCTCCGTGGCTTGCACCGGGAATGAGGTCCACCTGTCAGTGTGCCCCCTGCAGTTTAACAAGGGTAATGCCACAGCCAGCTGTGAGGGAGGCATGCCTGTGGTAGTGAGCTGTGTACCAGGGCCTCAATTCTCCGCGAGCAACAGtcagaagaagaagcagaagtcAACGTTCCGTGTGCGGTTGAAGGGTGGAGCCAAGATTGGAGAAGGCCGTGTGGAGGTCCTGAATAACAATGAGTGGGGCACAGTCTGTGATGACCGCTGGAGTCTGCAGGCAGCCAGTGTAGTCTGTAGGGAGCTGGGATTCGGCAGTGCTAAAGAGGCTCTGACTGGCGCAAGGATGGGTCAAGGTGAGACCACAGGTATGTCAGTTTCTCAAGGGCAAGATCTGGCCTACCCCTGGAACAAGAGGCCTATTCTGAGTTGGACTAGGGCAGACAGCAGAGCCAGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112321 lncRNA downstream 21309 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 116632 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 589179 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 607071 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 908689 1039272 ~ 1039471 (-) True G89912
TU112352 lncRNA upstream 90275 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 114476 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 220821 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 320661 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 408546 2373110 ~ 2464259 (-) True G90157
AMCG00017409 mRNA downstream 1235 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017401 mRNA downstream 166952 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017400 mRNA downstream 240883 1704946 ~ 1707277 (-) True AMCG00017400
AMCG00017397 mRNA downstream 347102 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017396 mRNA downstream 347870 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017407 mRNA upstream 21057 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017408 mRNA upstream 41195 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017406 mRNA upstream 58868 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017414 mRNA upstream 111614 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017417 mRNA upstream 564351 2528915 ~ 2566277 (-) True AMCG00017417
TU112073 other downstream 1596374 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1842275 105685 ~ 105885 (-) True G89804
TU112472 other upstream 644125 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2578211 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3193820 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3193820 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3257909 5222473 ~ 5223047 (-) True G90502

Expression Profile