RNA id: AMCG00017412


Basic Information

Item Value
RNA id AMCG00017412
length 4744
RNA type mRNA
GC content 0.40
exon number 17
gene id AMCG00017412
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2107891 ~ 2129512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCAAATCAGCCTCCATTCTGATTGGAGGCTGAAACaagtttaaaattttaaatctaGTGGACAGTTGTGTTAAACAGTATTGTATTTTGGAATCACTGCGTAAAGAGAGGAAGCGAGAAAGAGAGcaatcagaagaaaaacaattgacATCATTGTAGAAACCGATAAAGGGAGAACACGTGCTGCAAAACAGCCAGGTTGGGCTGTGTGGGACATGCTGGATGAGTGTGAGTGTTGTGAACGATGAGAACGCAGGAGTGGATCCTGGAAGAAAGTCTCTGAACCCGAACACCCTCTTCGCACCACAGCAGCCCACCGGAAGGCCCTCGATCCTGCGGCAGTCTCAGAACGAGAACATGCTCCAGAAGACCTTGCCAAAAAGTGCTAAGACACCAATGCGAGACCCCGTTACCCGTAAAATTGTCACTCCGTGTGGCAAGGTGGATGACTCCCTCGCCCTGGATGACTGTGCCGAGGCTTTTGACAGTTTGTCTCTGGAATCTTCCCCTGCTATCTCTACAGAtacTTTATCCTTCGAAAATGCCAGTCTCGGTACAACAGAACGTCCTTACCCTGATGATGAGATGCCAATTCAGAGCAATGGAGGATATTCTATTGACTATGACAACCTTGATGCCTTTGATCCATTTAAAAGCTCCAGTGAGATTGGCACTGATTTCTCTGAGCTACCTGTAACACCTGGAGACATTGCATCTGAAACCAGTGCTCAGGCCTCCACTGAGGAGTTGCCATCTGTTGATACTGTGTCAGCATTAGATGACACATTGTCCCTGGAAAATTCACTTAAGACTGAAGTGACTTCTGGCCAAGAAAATGCTGACAGTCCAGTCGTAATTAAAGAGAGAGATGCTTCAAAGTTTGATGTACTAGAGGATGTAGGTGACAAAGAAGGACCAGAAGTTCCCAAGCAAAGTTATAGTCTAGATTTAGACCATTTGGAGAATGCTGAATCATTTTGTTCATCGGCACAAGTACAGAACTCTCCACTAGCAGCTAAAAGCTCTTACACAATAGATTTTGATAAGCTTGATGACATCGATCCATTCAAAACTGGGGGGCCGAAGCTCCAGAATTCTCCTGTTTGTAATTCAAGGCTGCCCAATAACATGTCTCCGGTTCTCCCAGAGGAGCCCATAAAGCTAGAATCTGCTGTAGAAATGTTTCCAGCCATGAAAAAAGAACCTTGTGCAAGCACTGATGCATCTCCATTGGTGAAAGCTGAAGATGGAGGAATACCATCCGTTATCGCATCCCCATCTACTAATGCCCCTGTAGCAGGTTCATCCAGTACCCATGAAGATGCGCCCAATGGGTTGCATGGCTCTGAAGGGTATCCTGAGAAGCCAACCACTGAACCCTCTCCTGTGAAAGATGGACCAGTGAGActtgaatttaattttgatgATGGAGAGGTCAAATGTAAGCCACCCCCCAGAAAACTTGGCAAGAGGCCTCTTGGAGCCAAGGCTACTGTCAAAAAGCCAGCTGCAGCTGCTGAGAAAAAAGATGAGCCCAAATCCCTATCGGATCATTCAAACCCCTCTGAGGATCTCCCTAAAGCATCTTATAACTTTGATTTTGAGAAGTTTGATGCAAATTTTAATCCATTTGTGACTggttccaaaataaataattctccAGATATATCTGGTCCTGTGGctcaagcagcagcagcagcagcagcagcagaaattaTAGAGGGAAGTTTAACCTCTTTGGAAGATGAGCCTGAAAAGGTTGCCAACAGCGACGGTCCGGACATGGAGACATTACCAGCGGCTGAGGTGAAATCCCCTGAAAAAATCAAGATGTGTGTAACACCTCCAGAGAACAAATCTCATCCACTGAATACCACTGGCATCACGATTGAGGAGTCCTTTGCCACTTCTCAATCTACAGAAGAGAGAACTGAATCCTTTCAGCACAACAACATGgcttttaatttggattttccAAGCAATGAGTTCAAACCAGGAACATGTTTTAATGAGCAATTTGACTATCTGGAGCAGTTTGGATCTACATTCAAAGAATCTGCACTGAGAAAGCAGTCCTTGTACCTGAAGTTTGACCCTCTTTTGAGGGAAAGTCCACAGAAATTGGCTCCTCGCTCTGCAGAGATCAATGGCTTTCCACTCCCTCCATTATTTGCATCCCGGCTTGAAGCACAGAAGGCTGGAGCTGAGCTCAAGGAACAGACCAGAGAGGAGAAAGCTGCAGATCCATTGGGGACAAGTGTCTTAGGTTCTCTAGTTCCTGACTTTCCCTTGCCAGGCACTGGTGAAGATGCCATTATTGATGTTTTGAAATACAGTCAGAAAGACATGGATGCTGCCATTGAGCAAGTCCATCTAAAGgttcaagagaaggaaaatataattgctgatatgcaggagaaatatGAGAAACTGCGTATGGATTATAATGAAGTGGACCAGAAACAACAGGATGCAGCCAAACTGGAAATACAGAAGGTCATGCAGGAAAAACAGCAGGTCATCATGGACTTGAATTCGGTGGAGAAGTCCTTCTCTGATCTGTTCAAGAGGTTTGAGAAGCAGAAAGAAGTTCTAGAAGGCTACAAGAAAAATGAAGAAACCCTAAAGAAATGTGCACAGGACTACCTGGCGAGAATCAAAAAGGAAGAACAAAGATACCAGACACTAAAGGCACATGCTGAGGAGAAGATGAAACTTGCCAATGAGGAAATTGCCCAAGTGAGATCGAAGTTAAAGTCTGAAGGCGCATCATTTCATGCACAACTGTGCCGGCAGCAACTGAAAATACAGGCTCTTGAAAAGAATCTGGAACAGAAGgtGAAAGAAAACGAGGAATTGACGAAACTTTGTGACGAACTCATAGTGAATGTGCAAAAAACCTGAAGTTACTGAAAGCCCcgtttgtttatattaatgtcTGTGTtgtactatttttgtttttagacaCTTTGTGAATAAAGATCGATTTTATCATTAGAAATAAAGCTACATTGCAAAATCAATAGTAGCTGGCAATGTGCACTATTCTTCTTGCTCATTGTTTAAAGCAAGTTGGTTGGGCTTAGTTAAGAAATTTaaggatgtgtgttttttttcttccccctgtgTTATAAGACagactgacaaaaaaaaaaactacaagcTGCTACATGATTAGCAGGTAGTTCTTAATTAACctacatatttgtaaattggTATTCCTAACTAGTCTGTTGGAGTTGACTTGATATGGTGACTTTATGGTGACCAATTGTTTCTaacttattttcagtttattttcaaatttgtgGTCTAATAATCACTCCATGTTCTATCAGTCTTACTTTGGATACATTAAAGAGCATTAACTTGTAGTAGTCACCAAAGGTGATTAGGGAACGTTCAGCCCTGCTGAAGCCTGTTCTGTGTTCAccaatttacttatttttcatgtatCTTTTGCTTGTATCTGTGCACAGCAGCTTGAATCACTGTAATTTTTAAGGTCATATTTATGGATCAAGATTTTCACCCAGAAGTAATTTCTTGGGAAGCCCCTAGGATGTTTACATGGTGAAAATGAGCCTGAAGAAACATCCCAAATGCGTGGAAGGGTTGAAGTCCTGGAAAGACCATTGCAATCGTCCTCCACTGAACCCACTAACATTTTCGTGGACAATCGGAGGAAATTACCCAGCACAAGCTCCTATGAATGAATTATTGATGCCTGTTGACTTTTGTTAACTTGGTTGGTTAAACATGTATGTGGTACATAAGGCTTTTTCATTAAACTCTTCTGGATACAGCATaggtttaaataatgcattaggTATCTAACAATTCTTAATATTTAACAGCATGAATAcaaatttcaaaaatgttttctcaACTTCAAATTTATAGTGATTTTAATGCTATGCATTGCCCTGTGGAGTTGTGCTTCAGCATTTCTGTTTACACTCAAATACTAGTTCATACTTTAGATTTCAACTAGAGCAATTATGGATTATCTTAAATGGGATTTGTCAGTTCAAATGTATGCCtctaaatattgaatttaaaatctatttattcaACAACTATAAATTAGTTTGACTTATTTTTCCTTGTGTGGAAGAAAgtcattattaaattacaataaactgTTTAAACATTGTAACTGAAGTTGAGGGAGCTGGCATCATATACGTTAGAGATTTACAACCCTAGCCAAAAAGCTTTAAATTGGGTACAACCAAATTAGTTTTCCGATGCAGTAAAGTTAAATGTTCCACTGCGCTCAAGCACTCCTTCAGTCTGACTAATTTTATAATGCAAGGGTTGTCTATTGGCTTTTATTCTGTATCTTCCTTTTAATACTGCTTTGGTATACAGCTAACCTGTATTTTCCTGAGctaaaaatgaaactttctgtaCTAATTTCCCACCCTAGCTATTTCTATAGCAATAATTTGAGGTGCATGTTATTGAATTAAGGGGAATAAACACATTGAAATGTGAAGGACAGCTCCTGCCTGCTGAATATATCGCACAGAAGATGCAATATAATCAGCATAagacatttacacattttttttaagatcatGACAGTTTTATCAAGTTCAATGAGAAGGAAGCATAAAGAATCCACTTGCACAGCTTGCTTGGCTTCATCATAAGTAATTGCAAGTTGCAACAGAACAGCACTAATTTACTCGTTCAATTGTTGCCAACTTCTGGCTGTTAACTAACAGTTGCCTTGTT

Function

GO: NA

KEGG:

id description
K14283 TACC3, maskin; transforming acidic coiled-coil-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112325 lncRNA upstream 103285 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 103285 2004076 ~ 2004606 (+) False G90070
TU112288 lncRNA upstream 173107 1929142 ~ 1934784 (+) True G90042
TU112214 lncRNA upstream 518086 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 766596 1340901 ~ 1341295 (+) True G89938
TU112409 lncRNA downstream 332370 2461882 ~ 2504164 (+) True G90144
TU112419 lncRNA downstream 362395 2491907 ~ 2528801 (+) True G90149
TU112532 lncRNA downstream 1107933 3237445 ~ 3237726 (+) True G90248
TU112571 lncRNA downstream 1768306 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 2182746 4312258 ~ 4312475 (+) True G90333
AMCG00017405 mRNA upstream 58485 2047677 ~ 2049406 (+) True AMCG00017405
AMCG00017404 mRNA upstream 174440 1923477 ~ 1933451 (+) True AMCG00017404
AMCG00017411 mRNA upstream 178437 1923477 ~ 1929454 (+) True AMCG00017411
AMCG00017403 mRNA upstream 213429 1876676 ~ 1894462 (+) True AMCG00017403
AMCG00017402 mRNA upstream 232463 1872627 ~ 1875428 (+) True AMCG00017402
AMCG00017413 mRNA downstream 298381 2427893 ~ 2460519 (+) True AMCG00017413
AMCG00017415 mRNA downstream 443977 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017416 mRNA downstream 516762 2646274 ~ 2649483 (+) True AMCG00017416
AMCG00017419 mRNA downstream 533174 2662686 ~ 2664553 (+) True AMCG00017419
AMCG00017424 mRNA downstream 545439 2674951 ~ 2683508 (+) True AMCG00017424
TU112033 other upstream 1895955 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 2009508 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 557908 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 557908 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2533147 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4600226 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4600226 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile