RNA id: AMCG00017413


Basic Information

Item Value
RNA id AMCG00017413
length 2067
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00017413
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2427893 ~ 2460519 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGTATTGTCATCTTAGCCCATTCAGaTTCCTTGTCATCCGGTGACGACGAAGACTATGATGAGGAGGCTGATGATGCAGAAGCCCCATACTGGACCCGCCCGGACCGAATGGAAAAGAAGCTGCTTGCCGTTCCAGCTGCGAATACAGTGAAATTCCGCTGTGCGGCTGCTGGGAACCCCATGCCCACCATCCACTGGTTGAAGAATGGCAAAGAGTTCAAGGGAGAGCAGAGGATGGGTGGCATCAAGCTGAGACACCAGCAGTGGAGCCTGGTGATGGAGAGTGCGGTGCCTTCTGACCGGGGGAACTACACCTGTGTAGTGCAGAACAAATATGGCACTATTGTCCACACATACCAGCTTGATGTCCTCGAGCGGTCACCCCACAGGCCTATCCTGCAGGCTGGCTTACCGGCTAACCAGACGGTGGTGGTTGGCAGCGATGTGGAGTTCCATTGCAAAGTGTACAGCGACGCTCAGCCTCACATTCAGTGGCTCAAACACATAGAGGTCAATGGCAGCAGATACGCTAACGACGGTGTGCCTTACGTCAACATCCTCAAGACGGCAGGTATTAACACAACGGATAAGGAACTAGAGATTCTGTTCTTGccaaatgtttcttttgaagATGCAGGGGAGTATACTTGCCTGGCTGGGAATTCTATTGGGTATGCTTACCACTCTGCATGGCTGACAGTCCTACCAGCTATAGAAGAGATTGAAAAGGATGATGACTACGCCGACATCCTCATTTACGTGACAGGCTGTGTGCTTTTCATCCTCACCGTGGTCATCATCATCCTGTGTCGAATGCGGATGACCACTAAGAACACTCTAACCACTCCTCCTGTTCAAAAGCTCTCCAAATTCCCACTCAAAAGACAGGTGTCCTTGGAGTCCAATTCGTCCATGAATTCGAATACTCCACTGGTGAGAATCGCACGTCTGTCATCAAGCGATGGACCAGTGCTGGCCAATGTGTCTGAGCTGGAGCTCCCTGCTGATCCAAAGTGGGAATTCCCTCGAACAAGGCTGACGCTGGGGAAACCCCTGGGAGAAGGCTGCTTTGGCCAAGTGGTCATGGCAGAGGCAATTGGAATAGACAAGGAAAAACCAAATAAGCCGCTAACTGTCGCTGTCAAGATGTTGAAAGATGACGCCACAGACAAAGACCTCTCAGATCTGGTGTCAGAGATGGAAATGATGAAAATGATTGGAAAGCACAAAAACATCATTAACCTTCTAGGAGCCTGCACTCAAGATGGTCCACTATATGTCTTGGTGGAATATGCATCAAAAGGCAATTTAAGGGAGTATCTCAGGGCGCGGCGCCCTCCTGGCATGGACTATTCCTTTGACACCTGCAAGATCCCAGACGAGCAGCTGACCTTCAAAGACTTGGTGTCTTGCGCCTATCAAGTGGCAAGAGGAATGGAGTACCTCGCATCCCAAAAGTGTATTCATCGAGACTTGGCAGCCAGGAATGTGTTGGTTACTGATGACAATGTGATGAAAATAGCAGATTTCGGTCTGGCAAGGGACGTACATAATATCGACtactacaaaaaaacaacaaatGGTCGGCTGCCTGTGAAATGGATGGCTCCGGAGGCATTGTTTGACCGGGTCTACACGCACCAGAGCGATGTATGGTCCTATGGTGTCTTGTTGTGGGAGATCTTCACTCTGGGCGGGTCACCCTACCCAGGGATCCCAGTGGAGGAGTTATTCAAGCTGCTGAAGGAAGGCCACCGCATGGACAAGCCTGCAAACTGCACACATGAGCTGTACATGATTATGAGAGAGTGCTGGCATGCCGTTCCGTCGCAGAGGCCGACCTTCCGACAGCTCGTAGAGGACCACGACAGGGTGCTGTCTATGACCTCCACTGACGAGTACCTGGATCTGTCGGTGCCGTTTGAACAGTACTCCCCCACGTGTCAGGACTCCAACAGTACTTGCTCCTCGGGGGATGACTCTGTGTTTGCTCATGACCCCTTGCCCGACGAGCCTTGCCTTCTCAAACAGCATCAGGGTAACGGTGTCATCAGGACATGA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0001501 skeletal system development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function

KEGG:

id description
K05094 FGFR3, CD333; fibroblast growth factor receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112325 lncRNA upstream 423287 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 423287 2004076 ~ 2004606 (+) False G90070
TU112288 lncRNA upstream 493109 1929142 ~ 1934784 (+) True G90042
TU112214 lncRNA upstream 838088 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 1086598 1340901 ~ 1341295 (+) True G89938
TU112409 lncRNA downstream 1363 2461882 ~ 2504164 (+) True G90144
TU112419 lncRNA downstream 31388 2491907 ~ 2528801 (+) True G90149
TU112532 lncRNA downstream 776926 3237445 ~ 3237726 (+) True G90248
TU112571 lncRNA downstream 1437299 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 1851739 4312258 ~ 4312475 (+) True G90333
AMCG00017412 mRNA upstream 298381 2107891 ~ 2129512 (+) True AMCG00017412
AMCG00017405 mRNA upstream 378487 2047677 ~ 2049406 (+) True AMCG00017405
AMCG00017404 mRNA upstream 494442 1923477 ~ 1933451 (+) True AMCG00017404
AMCG00017411 mRNA upstream 498439 1923477 ~ 1929454 (+) True AMCG00017411
AMCG00017403 mRNA upstream 533431 1876676 ~ 1894462 (+) True AMCG00017403
AMCG00017415 mRNA downstream 112970 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017416 mRNA downstream 185755 2646274 ~ 2649483 (+) True AMCG00017416
AMCG00017419 mRNA downstream 202167 2662686 ~ 2664553 (+) True AMCG00017419
AMCG00017424 mRNA downstream 214432 2674951 ~ 2683508 (+) True AMCG00017424
AMCG00017422 mRNA downstream 226982 2687501 ~ 2694370 (+) False AMCG00017422
TU112033 other upstream 2215957 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 2329510 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 226901 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 226901 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2202140 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4269219 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4269219 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile