RNA id: TU112472


Basic Information

Item Value
RNA id TU112472
length 530
RNA type TUCP
GC content 0.56
exon number 4
gene id AMCG00017418
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2601783 ~ 2615562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCATCTGAGCAGCTGAAGGAATGAGACTCAATGTTGGATTGTTAACGTTGTCTTCTGTGCTGTTAAATATCGCTAGCGAAATGGTCTACTATCGGAGCTCATCGTTTTcaattctgactgcttgcttgTTTGGAGTGGTTGTTAGCCAAACCACACTGGGGCCCTCTGTGACAAACACCACAGGAAGTGAGAACTCCACAGTGACAACTGGCCTCCCCCTCAGCACTGTGACTCCTGGCTGCTTCTCCCTCAACACCTCCACCTGTGCTGCCTGTGCCCCTGGCACCTACTACGACAATGGTACCCTGGCATGCTCGTGCTGCCCAGAGCATGGTCTGTGTGTGGCCCAGACAGACTGCCAGCCGTGCGCCAGGGGGCACTACCAGCCTCTGGCAGCCCAGGAGTTGTGCTTGCCTTGCTCTCAGGGTTTCTACACAAATTCCACGGGGAGCCCTGTGTGCCAGCCGTGCCCAGCAGGCACCTTCTCCAACTCCACTGGTTCTGAGGTCTGCCAAGGGTGCTCTTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112428 lncRNA downstream 144430 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 323160 2285225 ~ 2285529 (-) True G90139
TU112389 lncRNA downstream 422950 2185385 ~ 2185739 (-) True G90129
TU112357 lncRNA downstream 529445 2079040 ~ 2079244 (-) True G90098
TU112352 lncRNA downstream 553326 2054839 ~ 2055363 (-) True G90093
TU112503 lncRNA upstream 105902 2721426 ~ 2722298 (-) True G90221
TU112506 lncRNA upstream 109660 2725184 ~ 2728350 (-) True AMCG00017426
TU112509 lncRNA upstream 220995 2836519 ~ 2836798 (-) True G90226
TU112527 lncRNA upstream 323726 2939250 ~ 2939477 (-) True G90243
TU112528 lncRNA upstream 324411 2939935 ~ 2940143 (-) True G90244
AMCG00017417 mRNA downstream 42412 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 181562 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 576473 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 593127 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 615148 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017426 mRNA upstream 95778 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 226398 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 814097 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 914159 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 1122289 3737813 ~ 3747843 (-) True AMCG00017434
TU112073 other downstream 2256903 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2502804 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1927251 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2542860 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2542860 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2606949 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3771728 6387252 ~ 6389038 (-) True G90715

Expression Profile