RNA id: AMCG00017421


Basic Information

Item Value
RNA id AMCG00017421
length 3177
RNA type mRNA
GC content 0.42
exon number 16
gene id AMCG00017421
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2696109 ~ 2708643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATACGGCACTTTTACCCCGGAAACAGTATCCTCCAGTTCCGTGCTGCTGTGCTGAGTGTGCGGTGAAGATGGCGAGCGGAGGGGTCTCTGTCGCGGCGCTGTGGACTGAAGTCAACCGCTGCGGGCAGGCTGGGGACTTTACCCGAGCCCTCAAATCCGTCAATAAAATTCTCCAGGAATGTAAAGACGACATAACAGCTCTGCGTTGTAAAGTCGTATGCCTTATTCAAAATGGCAGTTTCAAGGAAGCCCTGAATGTTATTCATACTCACACAAAAGTACTTGGCAGCGATGTAATTGCCTTTGAAAAAGCCTACAGTGAATACAGGCTGAACCGGGTAGAAAATGCCTTGAAGACAATTGAGAGTGCCACCCAGCAGACTGATAAACTGAAGGAACTCTATGGCCAAGTGGAAGACCTGGGCCTGCCGGAGACCAGCTATGAGCTGTGCTACAACTCTAGCTGTACACTTATCGGTCAAGGCAAGCTCACAGAAGCCATGAAGAAGCTCCAAGAAGCAGAGGAGCTGTGCCGACAGTCATTGTCTGAGGATTCCGACATGACAGAGGAAGATATTGACTCTGAGCTGGCTGTGATCCATTCCCAAATGGCATACGTCATGCAGTTACAGGGGCGGACTGAGGATGCACTGCAACTATACAATCAAGTCATCAAACTCAAgcCAACAGATGTGGGATTACTGGCGGTGACGGCCAATAACATCATTACAATAAATAAGgACCAAAATGTGTTCGACTCCAAGAAAAAGGTGAAGTTGACAAATGCGGATGGAGTGGAGCACAAACTGGCCAGGAAGCAACTGCAGGCTATTGAGTTTAACAAGGCTCTACTAGCCATGTACACCAATCAGGCAGAGCAGTGCCGTAAACTGGCATCCGATTTACAGACCCAGAACCCGGGGCACCCGCGCCCGGTGCTGATTCAGGTGGCGCAGCTCTGTAGAGAGAAGCAGCACTCGAAGGCTGTAGAACTGCTACAGATTTCTGCTCTGGTTACAATGTACAGTCATGAGGAACACATTGACAGTGCTATTGATATCTTCAGCCAAGCTATTCAGCACTACCAGAAACAACAGTCTGGTTCATCGGTTCATCTATCTCTTGTACGGGAAGCAGCCAATTTCAAGCTGAAGTACGGAAGGAAAAAGGAAGCTATAAGTGACCTGGAGCAGCTTTGGAAGCAGAACAGAAAGGACATACACACCCTTGCACAACTCATCTCTGCTTATTCTTTGGTGGATCAAGAAAAAGCTAAATCTCTCAGCAAATTTCTCCCATCCCCCGACACCATGTCTTTTAATGTGGACGTTGTTGAGCTGGAGAACTCGCACGGAGCCACATATATTCGAAAGAAGGCTGCTAAAGTGATTGGGGAAAATAGTCCCAAAGAACAAGGCCAGGAGGAtgtgaaaaagaagaagaagaaaaaaaaggGTAAAATGCCAAAGAACTACGACCCTAAAGTGGCTCCAGACCCTGAGCGCTGGCTACCGATGCGGGAACGGTCCTACTACCGTGGGAGGAAGAAGGGCAAGAAGAAGGAGCAAGTGGGCAAAGGAACACAGGGGGCCATGTCTGGGGGATCCGCTGAACTggaTGCTAGTAAATCTGCAAgcagcccccccacctccccaagACCTGGCTCAGCTTCCACATCAGCTGCTTCAAGCAACATAGTCCCCCCCAGACAGCAAAAACCAGCAGCCTCTGGAGCCACCAGGAAGAAACCccaacagaagaagaagaaaggcaAAGGCTGGTAGTGCTTAGAGGCCTAGAGAGAGTCTTTATAAAACTGCAGATGTAATGCACAGTAAAAATAATTCATGGGTTTGAAGCACCAAGAAGCAGGAGCTTGtcttaatatataatatatacacatggtTTCACTTCTGGTTAGAAATGAGGAAGTGTATCATGTTTGCAATACTTTTGATTGTTGCCCCCAGGCCCTTTAACTTGATATTGAgctaaatacatttgctttccaAGATAACACGTCTAAACTGCTAAGGTTTTTAAATCACTGTGGTTAACATAATGACAAAGGTGACAAAGTAATGGTAACGAAAAACGATGTGAAATTAAACCTATAAACACGTGTAAAGAGAAGTGAAACAGATTGACAGAATACCAGGCAAGTATTGTACGCTCATCGATTGAAACCTTGTTTGTATTCTTCTGCTTATGTTAACCACCAGGTCCAAGGTTTTGTTCTTTATACACAAATCTGAATATGTTTTGTTGTAGGGTTTGGATGTCCATGATGAATTTATAGTCCTTTCCATAATCAAAAACATGTAGACAACCATCTGAACTCTGGCTTCACTCTCAACACAATTCCTTGTTCATTCTTAAAGGGTTGACATTTATTAAAGTACACCTTTGTTTATCAccatatttgtttgtctttcaggTCTGTAGTATCAAATGTTTGAACTTGCTTTTGTTCTAGCAACCACTTAAACATTCACTTCAGATAACCAAAGGCTGAAATATAAATTGACATTCCCACATTGAACGCATATGGTGTTCATTAGCTTTCATGTGTAATTTCAGTATTCAGAACTCTATACAACATGTAAGGAAACTTCAAATCATATCGGCAGATGAGTTTTCAATAGAGAgatttttaaatactaaattCAAAGAGGAAACAAATTGACAATTTTGGTTTTCAAGTTAATCTGCCAGCCAATGTAGGTGTTtgaattagatttgttttatccCCAGCTGCACCTATATCCTTAGTATGCTGTTTGAGGCAATCTGTTTATGGGGTATGCAATAtgttataaatcacatatgataGAAAAGCATTTCCGTAAATTCGTATAcctcttgtgtataaatgtcaccATGTTCAtagaattatcagtatttaaacaTCCTTCAGTTGCCAAGGACATTTCAGGACACTTATTGCTAGTGGtgcaagtttttttattttttgtacatttatttttaatagttttgttacatttaacaacatgaaaacacaacacacgcaggcatttgtagttacAACACTTTTAGACTGAGAGAAGGGGTtgattgttacatttaatttaaataagtgtcTATATTTGTCTACTTCTGatgtgtgtaatttataattGGTTAATAGAAGCATGACTTGTTGTATAAGAGatgta

Function

GO: NA

KEGG:

id description
K03108 SRP72; signal recognition particle subunit SRP72

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112419 lncRNA upstream 167308 2491907 ~ 2528801 (+) True G90149
TU112409 lncRNA upstream 191945 2461882 ~ 2504164 (+) True G90144
TU112325 lncRNA upstream 691503 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 691503 2004076 ~ 2004606 (+) False G90070
TU112288 lncRNA upstream 761325 1929142 ~ 1934784 (+) True G90042
TU112532 lncRNA downstream 528802 3237445 ~ 3237726 (+) True G90248
TU112571 lncRNA downstream 1189175 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 1603615 4312258 ~ 4312475 (+) True G90333
TU112625 lncRNA downstream 1621727 4330370 ~ 4330583 (+) True G90337
TU112626 lncRNA downstream 1676598 4385241 ~ 4390541 (+) True G90338
AMCG00017422 mRNA upstream 1739 2687501 ~ 2694370 (+) False AMCG00017422
AMCG00017424 mRNA upstream 12601 2674951 ~ 2683508 (+) True AMCG00017424
AMCG00017419 mRNA upstream 31556 2662686 ~ 2664553 (+) True AMCG00017419
AMCG00017416 mRNA upstream 46626 2646274 ~ 2649483 (+) True AMCG00017416
AMCG00017415 mRNA upstream 97139 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017420 mRNA downstream 428 2709071 ~ 2712473 (+) True AMCG00017420
AMCG00017423 mRNA downstream 4514 2713157 ~ 2726827 (+) True AMCG00017423
AMCG00017427 mRNA downstream 567020 3275663 ~ 3481722 (+) True AMCG00017427
AMCG00017428 mRNA downstream 858617 3567260 ~ 3568720 (+) True AMCG00017428
AMCG00017429 mRNA downstream 1480605 4189248 ~ 4199454 (+) True AMCG00017429
TU112484 other upstream 656 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 656 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 2484173 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 2597726 48007 ~ 98383 (+) False AMCG00017386
TU112690 other downstream 1954016 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4021095 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4021095 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 4021095 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 4021095 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile