RNA id: AMCG00017425


Basic Information

Item Value
RNA id AMCG00017425
length 498
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00017425
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2841922 ~ 3087650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCAGATACGAGGACGAGGACTGACAGCAATtCTAAATtggCTGGTGAAGCTGAACCTGGaaaGCTGGGCGGCGGCGGTGAAGGCGGCGACCGCTGGGCACTCGGGCTGGGCGGCAgcaatgagcagacagaaaccaaggagaatcgaaaggcgaggtcgagCTGTGAGGGAGGATATGTACTATAAAGATGGGAGGATTGTAGCTGTGTGTATCGTGCATGCTCCATGTTTCTTCTCTCAAACCCTGTTTGATTGCCTTGTCATTGGCCCAGAAACAGCCAAGCCAGTCACTGAAGATATTTCTGACctgaattatttgaaaatGCTTAAGGAGGGTATGAAAACACTTGCACGTTTGGAGAAGATTAAACAGTACCCAGAATTATTCCATCCTCTACTACCCCTTACACTCACTGCTGAGATCTTGGATGACTCTTCTATATTAGGTTTGCTCCAACTGGAAGTAACCAAAGACTTACAGAAAGCAGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112509 lncRNA downstream 5124 2836519 ~ 2836798 (-) True G90226
TU112506 lncRNA downstream 113572 2725184 ~ 2728350 (-) True AMCG00017426
TU112503 lncRNA downstream 119624 2721426 ~ 2722298 (-) True G90221
TU112428 lncRNA downstream 377663 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 556393 2285225 ~ 2285529 (-) True G90139
TU112536 lncRNA upstream 267415 3355065 ~ 3355489 (-) True G90252
TU112539 lncRNA upstream 316836 3404486 ~ 3404766 (-) True G90255
TU112567 lncRNA upstream 584645 3672295 ~ 3685214 (-) True G90281
TU112574 lncRNA upstream 867238 3954888 ~ 3955136 (-) True G90287
TU112576 lncRNA upstream 954037 4041687 ~ 4041894 (-) True G90289
AMCG00017426 mRNA downstream 28 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017418 mRNA downstream 226360 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 275645 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 414795 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 809706 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017430 mRNA upstream 341971 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 442033 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 650163 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 688844 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017437 mRNA upstream 819802 3907452 ~ 3908488 (-) True AMCG00017437
TU112472 other downstream 226398 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 2490136 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2736037 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1455125 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2070734 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2070734 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2134823 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3299602 6387252 ~ 6389038 (-) True G90715

Expression Profile