RNA id: AMCG00017426


Basic Information

Item Value
RNA id AMCG00017426
length 639
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00017426
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2711302 ~ 2841894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAAGGCAGTTGGATTTTGTCCCGAGCCAGCTGTGGAGTTCCTTCATGGACAAGACATTGATGTAGTCACTCTACAAGTTTCCCATTGCAAACACCTGTGTGAACGATATGAAGATTTTAAGGCCAATATAGACTTTGCTCTTTGCAACACCCAAGGCTTTGGACTGGAGTTgCGGATGGAGTTAaagATTGCaatgaaatatattgaaatcatAGGTGTTGAGATCGGGGGGGACGCCACGGAAGATCAGAGTCTCTTCAGACAGGAGTCGAGACACGGACTTGGAGACGGAGAGGAACTCCTGGAGAAGACGGTTATGGTTTCAGGGGTGAACAGAAGTCTGCACCACTGGCAAGGGGAAGTGGTGGAGACTTCCCTCTACAGGCACAGTTGCTGTGCTCTTACCTTGAACATGGTGCTGCCCAGCTGTGCAGGGGACATGCTGACCACCACTCCTGCCCGCTGCAGGGCCGCGATCTTCTCCTTGGCACCCCCTTTGCCTCCTGCAATGATGGCCCCAGCGTGGCCCATTCGCCTGCCTGGAGGAGCATCCATGAAGGTGCGTCTTTGCCAAAGGAAAGCGGTCCGGGTCAGCAGAGTCCACTACAAACACCAACACCTGGGCCTTGCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112428 lncRNA downstream 247043 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 425773 2285225 ~ 2285529 (-) True G90139
TU112389 lncRNA downstream 525563 2185385 ~ 2185739 (-) True G90129
TU112357 lncRNA downstream 632058 2079040 ~ 2079244 (-) True G90098
TU112352 lncRNA downstream 655939 2054839 ~ 2055363 (-) True G90093
TU112527 lncRNA upstream 97356 2939250 ~ 2939477 (-) True G90243
TU112528 lncRNA upstream 98041 2939935 ~ 2940143 (-) True G90244
TU112536 lncRNA upstream 513171 3355065 ~ 3355489 (-) True G90252
TU112539 lncRNA upstream 562592 3404486 ~ 3404766 (-) True G90255
TU112567 lncRNA upstream 830401 3672295 ~ 3685214 (-) True G90281
AMCG00017418 mRNA downstream 95740 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 145025 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 284175 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 679086 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 695740 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017425 mRNA upstream 28 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 587727 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 687789 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 895919 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 934600 3776494 ~ 3799472 (-) True AMCG00017432
TU112472 other downstream 95778 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 2359516 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2605417 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1700881 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2316490 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2316490 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2380579 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3545358 6387252 ~ 6389038 (-) True G90715

Expression Profile