RNA id: TU112506


Basic Information

Item Value
RNA id TU112506
length 1130
lncRNA type sense_over
GC content 0.39
exon number 2
gene id AMCG00017426
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2711302 ~ 2841894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcaGAACAATGTCAAAGAcaaatttattaatttcttctaGTGTACATTTTGTGTACAGATTGCaatgaaatatattgaaatcatAGGTGTTGAGATCGGGGGGGACGCCACGGAAGATCAGAGTCTCTTCAGACAGGAGTCGAGACACGGACTTGGAGACGGAGAGGGTGTTGTGCAGTTGTGCTGTTCTTTGCTTGTTATTTACAACATCTTTCTCTTCTCAAATTCCTGAACATGGTGCTGCCCAGCTGTGCAGGGGACATGCTGACCACCACTCCTGCCCGCTGCAGGGCCGCGATCTTCTCCTTGGCACCCCCTTTGCCTCCTGCAATGATGGCCCCAGCGTGGCCCATTCGCCTGCCTGGAGGAGCAGTCAAGCCAGCGATGAACGACACCACAGGCTTGGCATTGGCaccctgcaaaacacacacattattaaacaAGTTCACTTCAAAATAACAACCCAAAAGTCCCCAAAGCATctcaaaaatgtataacagcAGGGAGTGAGACactgtgaatattttaaagcatttcctttgtattatttacaaagCGTAAACATAATTCACAGTGTGTTTTCTAGTATATTTGTCaaagctctctctctgatgATCACAAAtaaattttaagttttttaaatgaaaggaattaaataaaaaaggtttctaTAAGGAATCTCTTGGATCACCCCTTAAGATTAAAAACAgtggaatacattttattgtacaagTTGATGCATCAATTATCAAATTGTACTTGTCTGTACTCAGTACCATTTAATATGTGTACTGAACTCTCATGGGAAGTAAGGGCCCTCTTTTTCCCCACCTGTATAGTGAGGGGTcacttttgaaaacatttaaacaaaaacttttttgaGGCTAAATCGCCCAAGATTATAGTGAATCGATTTTATACCCTGAAGGATACTGTCCTTGGTGCTGTTGCACAGAAGCTTAGTGATTAATTTCCAAACCACTGCTATTATCTAAATCAAAAAAACCTATTAATATGTATAGATTTTATAGCAAATAATTCCCTCAATTGCAGTGGCcttgttttaaatctattttattggCTTTATACTGAGAATAATCACCTATGAGAGACAGCTATAAGACCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112503 lncRNA downstream 2886 2721426 ~ 2722298 (-) True G90221
TU112428 lncRNA downstream 260925 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 439655 2285225 ~ 2285529 (-) True G90139
TU112389 lncRNA downstream 539445 2185385 ~ 2185739 (-) True G90129
TU112357 lncRNA downstream 645940 2079040 ~ 2079244 (-) True G90098
TU112509 lncRNA upstream 108169 2836519 ~ 2836798 (-) True G90226
TU112527 lncRNA upstream 210900 2939250 ~ 2939477 (-) True G90243
TU112528 lncRNA upstream 211585 2939935 ~ 2940143 (-) True G90244
TU112536 lncRNA upstream 626715 3355065 ~ 3355489 (-) True G90252
TU112539 lncRNA upstream 676136 3404486 ~ 3404766 (-) True G90255
AMCG00017418 mRNA downstream 109622 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 158907 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 298057 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 692968 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 709622 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017425 mRNA upstream 113572 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 701271 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 801333 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 1009463 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 1048144 3776494 ~ 3799472 (-) True AMCG00017432
TU112472 other downstream 109660 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 2373398 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2619299 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1814425 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2430034 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2430034 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2494123 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3658902 6387252 ~ 6389038 (-) True G90715

Expression Profile