RNA id: AMCG00017427



Basic Information


Item Value
RNA id AMCG00017427
length 951
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00017427
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3275663 ~ 3481722 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGAATGGAAGAGATGTGCTCCTATTAACTGCCACTCAAAATATACCGCAGCGAGGTCATCGAGAGTCTGATGACTCTCAAAACAaggGTCTCACAAAAATGATAATTGATTGCCTTGAAAAACATGGTCTGGACTACAAAAATAATCTTGTGGGGCAAGGCTATGACCATGCATCCGTCATGAGCGGAAAGCATTCTGTGGCAGTTCAGAAAGAGCTGTATCCACAGCAGCAGCCCAGGGAACTACAGAGACTTACAGGAGCGGCCCTGGCCCTGCCTGGTTGGTCTATGCCGTCTCTTGGTGTGGTCGGAGGGGCGCTGGGTCCGCTGGCTTGTCAGGGGGTCCTGAGAGGCCAGAGAACAAGCCACTGGAGGCTCTACCTTCTTCAGGACCATCCTGAGAGAGCCGGGATTGGAGGGGTCACAGGCTCTAGTTATGACTTCCCACCAAGGCTTGTGTCCCTTCTGAGGACTTTTCTTATGAACGAGGGCTTCCTGGACAAGAGCCTCATTCCCCAGGAAGAAGACTATGGTCGTACACGCACAGTCCAGCATCGGATCCTGACTGGAGAGGCACCCCCCACTCGAGGGATGGACGGCACCAGCTCCAACAAGGGAACGGGGCTTCTTTTCGGGGGCTTTCATCCTCCAGGAGACCACGGGCGAGTTCACAGCAGCAGTGCCATAGACTTTCTGAAGAAAAACCTCGGGTTAAAATCTTGTAAGAAGCCCAAGGACTCCGGATTTGAAAAGAATAAGCAGTACCGGTCTCGCCTCAATGACAGCTGCAAGGTCTGCCAATCCAACAGCTGGATCAGGGACAAAAACCACATCCTCGTGTATCAGgcACTGATGCAGGATCTTCCTGGGTCTAAAttgGTGTTGGTCATCGTCACAAATGAGATATCCCTTGTGCTACAGTGTGATGCGATGATGTCAAATACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112532 lncRNA upstream 37937 3237445 ~ 3237726 (+) True G90248
TU112419 lncRNA upstream 746862 2491907 ~ 2528801 (+) True G90149
TU112409 lncRNA upstream 771499 2461882 ~ 2504164 (+) True G90144
TU112325 lncRNA upstream 1271057 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 1271057 2004076 ~ 2004606 (+) False G90070
TU112571 lncRNA downstream 416096 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 830536 4312258 ~ 4312475 (+) True G90333
TU112625 lncRNA downstream 848648 4330370 ~ 4330583 (+) True G90337
TU112626 lncRNA downstream 903519 4385241 ~ 4390541 (+) True G90338
TU112680 lncRNA downstream 1115069 4596791 ~ 4606571 (+) True AMCG00017445
AMCG00017423 mRNA upstream 548836 2713157 ~ 2726827 (+) True AMCG00017423
AMCG00017420 mRNA upstream 563190 2709071 ~ 2712473 (+) True AMCG00017420
AMCG00017421 mRNA upstream 567020 2696109 ~ 2708643 (+) True AMCG00017421
AMCG00017422 mRNA upstream 581293 2687501 ~ 2694370 (+) False AMCG00017422
AMCG00017424 mRNA upstream 592155 2674951 ~ 2683508 (+) True AMCG00017424
AMCG00017428 mRNA downstream 85538 3567260 ~ 3568720 (+) True AMCG00017428
AMCG00017429 mRNA downstream 707526 4189248 ~ 4199454 (+) True AMCG00017429
AMCG00017439 mRNA downstream 901610 4383332 ~ 4384747 (+) True AMCG00017439
AMCG00017445 mRNA downstream 1111080 4592802 ~ 4599888 (+) False AMCG00017445
AMCG00017449 mRNA downstream 1146493 4628215 ~ 4633610 (+) True AMCG00017449
TU112484 other upstream 580210 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 580210 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 3063727 207586 ~ 211936 (+) True AMCG00017388
TU111992 other upstream 3177280 69898 ~ 98383 (+) False AMCG00017386
TU112690 other downstream 1180937 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 3248016 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 3248016 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 3248016 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 3248016 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile