RNA id: AMCG00017430


Basic Information

Item Value
RNA id AMCG00017430
length 1434
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00017430
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3429621 ~ 3487525 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGgtcGCAAACTTGGCCTGTTCAATCTCCAATAATGAAGAAGGTGTGAAGCTGGTCCGTATGGCAGCTACCCAGATCGATAGCTTGTGCCCACAGGTAATCAATGCTGCCCTCACCCTGGCCGCCAGACCGCAGAGCAAAGTGGCCCAGGACAACATGGACGTGTTCAAAGACCAGTGGGAGAAGCAGGTCCGCGTTCTCACCGAGGCTGTTGATGACATCACTTCTGTTGATGACTTCTTATCCGTCTCAGAAAACCACATCCTGGAAGATGTGAACAAGTGTGTCATTGCTCTCCAGGAGGGGGACGTTGACACTTTAGATCGAACCGCTGGTGCGATCCGTGGTCGAGCTGCCAGGGTGGTTCACATCATAAATGCAGAGATGGAGAACTATGAGCCGGGAGTTTATACTGAGCGGGTTTTGGAAGCCATCAAATTACTCTCTGAGACTGTTATGCCACGTTTTGCTGAACAAGTCGAGGTTGCAATTGAAGCATTGAGCACAAATCCCCCGCAGCCATTTGAAGAGAATGAATTCATTGATGCTTCCCGCTTGGTCTACGATGGAGTTCGTGACATCAGGAAAGCTGTTTTGATGATAAGGACCCCAGAGGAGCTCGAGGATGACTCTGACTTTGAACAAGAGGACTATGATGCACGCAGCAGGACGAGTGTTCAGACTGAAGACGATCAGCTTATTGCAGGACAGAGCGCCCGGGCAATTATGGCTCAGCTGCCCCAAGAAGAGAAAGCTAAAATTGCAGAGCAGGTTGAGAGTTTCCGCCAGGAGAAGTGCAAGCTGGACGCTGAAGTGGCCAAGTGGGACGACAATGGCAACGACATCATTGTGCTGGCTAAACAGATGTGCATGATCATGATGGAAATGACAGACTTTACcagAGGCAAAGGCCCACTGAAGAATTCATCGGATGTGATTAATGCAGCTAAGAAGATTGCCGAAGCCGGCTCCAGGATGGACAAACTCGCCCGCGCTGTTGCTGATCAGTGCCCTGATTCAGCCTGTAAGCAGGACTTGCTGGCATACCTGCAGAGAATTGCACTCTACTGTCATCAGCTGAACATCTGCAGCAAGGTGAAGGCTGAGGTGCAGAACCTCGGAGGAGAGCTCATCGTGTCCGGGctGGACAGTGCAACATCACTCATCCAGGCAGCCAAAAACCTGATGAATGCTGTTGTGCTTACTGTGAAGGCCTCCTATGTGGCTTCCACAAAATACCAGAAAGTCTATGGCACTGCTGCTGTGAACTCGCCCGTGGTCTCCTGGAGGATGAAAGCCCCCGAAAAGAAGCCCCTGGTCAAGAGGGAGAAGCCAGAGGAGTGCCAGACCCGAGTGAGACGGGGCTCACAGAAGAAACACATCTCCCCTGTTCAGGCTCTGAGCGAGTTTAAGGCCATGgatgccttttaa

Function

GO: NA

KEGG:

id description
K05691 CTNNA; catenin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112539 lncRNA downstream 24855 3404486 ~ 3404766 (-) True G90255
TU112536 lncRNA downstream 74132 3355065 ~ 3355489 (-) True G90252
TU112528 lncRNA downstream 489478 2939935 ~ 2940143 (-) True G90244
TU112527 lncRNA downstream 490144 2939250 ~ 2939477 (-) True G90243
TU112509 lncRNA downstream 592823 2836519 ~ 2836798 (-) True G90226
TU112567 lncRNA upstream 184770 3672295 ~ 3685214 (-) True G90281
TU112574 lncRNA upstream 467363 3954888 ~ 3955136 (-) True G90287
TU112576 lncRNA upstream 554162 4041687 ~ 4041894 (-) True G90289
TU112594 lncRNA upstream 715082 4202607 ~ 4202807 (-) True G90307
TU112643 lncRNA upstream 859461 4346986 ~ 4347291 (-) True G90354
AMCG00017425 mRNA downstream 341971 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017426 mRNA downstream 587727 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017418 mRNA downstream 814059 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 863344 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 1002494 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017431 mRNA upstream 42158 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 250288 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 288969 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017437 mRNA upstream 419927 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017438 mRNA upstream 420988 3908513 ~ 3909212 (-) True AMCG00017438
TU112472 other downstream 814097 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3077835 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 3323736 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1055250 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 1670859 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 1670859 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 1734948 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2899727 6387252 ~ 6389038 (-) True G90715

Expression Profile