RNA id: AMCG00017431


Basic Information

Item Value
RNA id AMCG00017431
length 255
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00017431
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3529683 ~ 3539396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCTGTTTTACTCTTGCAGACTGGCAGAAAAGAGAAAGGAGACCCACTTAACACCGCCATTGACAAGATGACCAAAAAAACAAGGGACCTCCGAAGACAGCTGCGGAAGGCAGTGATGGACCACATCTCTGACTCCTTCTTAGAGACAAATGTGCCCCTGCTTGTGCTCATTGAGGCTGCAAAGAGCGGCAATGAAAAGGAGGTCAAAGAGTATGCCCAGGTCTTCCGTGAGCATGCCAACAAGCTCGTCGAG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112539 lncRNA downstream 124917 3404486 ~ 3404766 (-) True G90255
TU112536 lncRNA downstream 174194 3355065 ~ 3355489 (-) True G90252
TU112528 lncRNA downstream 589540 2939935 ~ 2940143 (-) True G90244
TU112527 lncRNA downstream 590206 2939250 ~ 2939477 (-) True G90243
TU112509 lncRNA downstream 692885 2836519 ~ 2836798 (-) True G90226
TU112567 lncRNA upstream 132899 3672295 ~ 3685214 (-) True G90281
TU112574 lncRNA upstream 415492 3954888 ~ 3955136 (-) True G90287
TU112576 lncRNA upstream 502291 4041687 ~ 4041894 (-) True G90289
TU112594 lncRNA upstream 663211 4202607 ~ 4202807 (-) True G90307
TU112643 lncRNA upstream 807590 4346986 ~ 4347291 (-) True G90354
AMCG00017430 mRNA downstream 42158 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017425 mRNA downstream 442033 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017426 mRNA downstream 687789 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017418 mRNA downstream 914121 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 963406 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017434 mRNA upstream 198417 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 237098 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017437 mRNA upstream 368056 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017438 mRNA upstream 369117 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017436 mRNA upstream 664290 4203686 ~ 4204261 (-) True AMCG00017436
TU112472 other downstream 914159 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3177897 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 3423798 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1003379 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 1618988 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 1618988 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 1683077 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2847856 6387252 ~ 6389038 (-) True G90715

Expression Profile